Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0023
(289 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 118 1e-27
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 116 2e-27
07_01_0697 + 5265079-5266281 30 0.26
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928 28 1.1
07_01_0385 - 2871628-2872131 28 1.4
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 1.8
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 26 4.2
07_03_0039 - 12718972-12720699 26 5.6
02_01_0679 - 5048653-5051394 25 7.4
11_01_0796 - 7000747-7001193 25 9.8
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 25 9.8
06_03_0343 + 19750914-19751047,19752091-19752676 25 9.8
04_04_1651 - 35057525-35057680,35058302-35058311,35058429-350585... 25 9.8
03_05_0669 + 26589867-26589927,26590674-26590858,26590950-265910... 25 9.8
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225... 25 9.8
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 25 9.8
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 118 bits (283), Expect = 1e-27
Identities = 50/77 (64%), Positives = 60/77 (77%)
Frame = +2
Query: 23 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 202
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 203 CKRTVAGGAWVFSTTAA 253
C + AGGA+ +T +A
Sbjct: 85 CGKVKAGGAYTMNTASA 101
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 116 bits (280), Expect = 2e-27
Identities = 50/74 (67%), Positives = 58/74 (78%)
Frame = +2
Query: 32 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 211
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 212 TVAGGAWVFSTTAA 253
AGGA+ +T +A
Sbjct: 93 VKAGGAYTMNTASA 106
>07_01_0697 + 5265079-5266281
Length = 400
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 158 DAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAAYH 259
DA++R C G W +C R GG F A YH
Sbjct: 19 DALQRFC-GAWRDMQCSRRGGGGGDAFVVGAVYH 51
>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
Length = 244
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 199 AMQEDCSR--RSLGILHYCCLSCRSAV-RRLRE 288
A EDC R + GIL Y C SCR+ V ++RE
Sbjct: 145 AQDEDCFRWNNAAGILCYGCESCRAGVMEKVRE 177
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 134 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 232
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 113 EVTQHAKYTCSFCGKDAM 166
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 26.2 bits (55), Expect = 4.2
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +2
Query: 5 VSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCV 181
+ RF ++V K G Y L K AKYT G A RS
Sbjct: 63 MKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDRSSA 122
Query: 182 GIWSCKRCKRTV 217
G SCK ++ V
Sbjct: 123 GAVSCKLREKNV 134
>07_03_0039 - 12718972-12720699
Length = 575
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 240 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 88
EN A +LH +D + QERF L + + C + S+F IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464
>02_01_0679 - 5048653-5051394
Length = 913
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = +3
Query: 18 LPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 116
LP VPK LELLA++ + V L V+W + WK
Sbjct: 864 LPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>11_01_0796 - 7000747-7001193
Length = 148
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +1
Query: 214 CSRRSLGILH--YCCLSCRSAVR 276
C RR L +LH CC++CR VR
Sbjct: 39 CMRRGL-LLHPASCCIACRVVVR 60
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +2
Query: 140 CSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 232
C + G + ++ CV IW+ R G W
Sbjct: 284 CRYIGPNKLRNFCVDIWNWLRAVPEKLQGKW 314
>06_03_0343 + 19750914-19751047,19752091-19752676
Length = 239
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 226 SLGILHYCCLSCRSAVRRLRE 288
++ + YCCL CR VR R+
Sbjct: 113 AMAVSVYCCLLCRDRVRSDRD 133
>04_04_1651 -
35057525-35057680,35058302-35058311,35058429-35058569,
35058675-35058784,35058907-35059006,35059108-35059308,
35059674-35059879,35060504-35060716,35060785-35060923,
35061370-35061606,35061688-35061893,35062664-35062759,
35062900-35063040
Length = 651
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 30 PNVPKRLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML 164
P+ R L +A + +P Y + KR+ NTQ L+ ++R++
Sbjct: 569 PDTELRESLRLAVAEILLPAYRSFLKRFGLSNTQEFLSLELMRLV 613
>03_05_0669 +
26589867-26589927,26590674-26590858,26590950-26591045,
26591128-26591223
Length = 145
Score = 25.0 bits (52), Expect = 9.8
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +3
Query: 36 VPKRLELLANMAHVTVPLYVKW 101
+P EL+ +++ +P+YV W
Sbjct: 84 LPDASELIVGSSYICIPVYVSW 105
>01_02_0071 +
10822008-10822011,10822219-10822364,10822452-10822544,
10822722-10822781,10822855-10823127,10823229-10823303,
10823419-10823475,10823593-10823733,10823813-10823863,
10823905-10823955,10823956-10824051,10824159-10824242,
10824330-10824432,10824518-10824600
Length = 438
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 80 GASLRKMVKKMEVTQHAKYTCSFCG 154
GAS+ +VK V QHAK C+F G
Sbjct: 415 GASMEFLVKL--VPQHAKKQCAFLG 437
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 45 RLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML 164
R + + + +T L++ W W P TQS + FV +L
Sbjct: 84 RSPVSSTLPQITGRLFITWGILWSFPETQSYI--FVTSLL 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,893,199
Number of Sequences: 37544
Number of extensions: 181300
Number of successful extensions: 457
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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