Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0016
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    27   7.2  

>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/82 (20%), Positives = 34/82 (41%)
 Frame = +1

Query: 283 YGIALPIKQVPTQKTYNYVEKNKYDNIVVLDHSFALGMFKQSIYNQTMLLFTKSSD*ITK 462
           Y + + +K  P      +  +   D + VLD S      K  +  QTM +   +   + +
Sbjct: 278 YSVVMKVKSPPFPTARGFARRVPVDLVAVLDVSGRNSGGKLEMLKQTMRIVLSNLREMDR 337

Query: 463 MVVMFYYNVKTALTELRSXTIN 528
           + ++ + +    L+ LR  T N
Sbjct: 338 LSIIAFSSSSKRLSPLRRMTAN 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,416,440
Number of Sequences: 28952
Number of extensions: 147810
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)