Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0008
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0010 - 14078740-14079270 32 0.38
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671... 32 0.38
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 31 0.67
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 31 1.2
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 31 1.2
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 31 1.2
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 30 2.0
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808... 29 3.5
02_05_0813 - 31951168-31951722 29 3.5
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 29 4.7
11_04_0151 + 14135390-14135630,14135723-14136132 28 6.2
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 28 6.2
09_04_0164 + 15265878-15268701,15268782-15269200 28 8.2
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 28 8.2
>10_08_0010 - 14078740-14079270
Length = 176
Score = 32.3 bits (70), Expect = 0.38
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = -2
Query: 661 RSVKQRVH--CGALSSGAVLHLRRGVVDKPTAANIAAIRC--SSAVKYSRRRLTLGSPPT 494
R Q +H C S RRG D A +A RC S+AV+ RR GS PT
Sbjct: 84 RQPLQELHNSCNTRSRWPRRGARRGGRDPRVARRASASRCSTSTAVRRFRRLCIRGSTPT 143
Query: 493 GVCWMP-LIPTTAGFGSFCWPFHGLSGNSSP 404
VC + L+ A G FH G P
Sbjct: 144 TVCILAHLVAAWAHAGELEDHFHVSVGVQRP 174
>08_02_0645 -
19666189-19666209,19666330-19666437,19667041-19667152,
19667321-19667417,19667809-19667911,19668071-19668152,
19668519-19668665,19668763-19668863,19669037-19669231
Length = 321
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 159 ERLPAVARVVGSLHVPPLQMRDQRREILHSCCGCRKPKIPENAL-ECHEYIEDENV 323
ER + + + P +R R+ + S G + EN L +C+EY++ EN+
Sbjct: 173 ERERDMINIYAQMFTQPFSLRQARKVLFASKLGLAQSDFSENMLKQCNEYVKQENI 228
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV + +++ +PW W D+ T RC ++D KY
Sbjct: 288 QLCVFQVAKESKKPWIWW-DYVTDFHIRCPMKDKKY 322
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 670 SPIRSVKQRVHCGALSSGAVLHLRRGVVDKPTAANIAA 557
+P +V + CG L++GA+LHL V A A
Sbjct: 19 APALAVASNIQCGPLAAGAMLHLAAAVASNAAAGKAQA 56
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV + + + +PW W D+ ++ RC +++ KY
Sbjct: 31 QLCVHRVANETGRPWAWW-DYVMDYKIRCSMKEKKY 65
>10_08_0814 -
20779400-20779487,20779780-20780030,20780528-20780812,
20781563-20782008,20782095-20782485
Length = 486
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 451 GSFCWPFHGLSGNSSPGCPLVCTIL 377
GSF WPF G +S GC ++C +L
Sbjct: 435 GSFFWPF---VGGTSSGCFMICIVL 456
>02_05_0813 - 31951168-31951722
Length = 184
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 338 LCAIALRRR-SKWRENSANQRAAWRTVPR*TMEGPTKRAKSCCCRNERHPADTGRWRAQG 514
+CA LR R S SA+ A+ +V R G + A SCC + +D A G
Sbjct: 30 VCAPCLRERLSHLMSASASASASLPSVVR----GEEEEASSCCSSSSEASSDASSSAASG 85
Query: 515 QASP 526
+SP
Sbjct: 86 SSSP 89
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 429 WKGQQNEPN--PAVVGMSGIQQTPVGGEPRVRRLLEYLTAEEQRMAAILAAVGLSXXXXX 602
W+GQ+N P P G+ + P P RR + LTAEE+++ + LS
Sbjct: 1833 WRGQRNNPGRPPRKPDGRGLPRRPDERGPP-RRHFD-LTAEEEKILGEIEPTVLSIRKIF 1890
Query: 603 XXXXAPXESAPQCTRCLTERIGEHNLSK 686
+ +P+ + + E + EH+ K
Sbjct: 1891 RESIDSIKLSPEDEKFIKENVLEHHPEK 1918
>11_04_0151 + 14135390-14135630,14135723-14136132
Length = 216
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 528 PGDA*PWARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALW 391
P A WA H+ S R QQQ R G + +R V+ A+ W
Sbjct: 171 PSCASRWAAHQMSSPPARVLHQQQHHNRHSGEARPHRYLVQSASHW 216
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 94 LVLPALSAEDVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEI 225
+ +PA +A S AC + Q + E S TCH RC+I
Sbjct: 266 MTIPAEAASSSSAFACAVAALAEQQQMYGEASSTATCHTSRCDI 309
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 610 LHLRRGVVDKPTAANIAAIRCSSAVKYSRRRLTLGSPPTGVCWMP 476
L+L ++ P A+I + + + S L G+ PT +CW+P
Sbjct: 401 LNLELNAIEGPIPADIGDVINITLMNLSSNLLN-GTIPTSICWLP 444
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 130 YQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
+Q CV K + + +PW W D+ RC +++ KY
Sbjct: 330 HQICVFKAANESGKPWL-WWDYVHDFSIRCPMKEKKY 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,603,885
Number of Sequences: 37544
Number of extensions: 503856
Number of successful extensions: 1549
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -