Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0004
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099... 31 0.92
09_06_0081 + 20745627-20748144,20748211-20748308 30 1.6
09_02_0082 - 4060018-4061604 29 2.1
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 2.1
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 29 3.7
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 28 4.9
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 28 6.5
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 27 8.6
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 27 8.6
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 27 8.6
>08_02_0021 +
11307795-11308093,11308454-11308556,11309623-11309931,
11310190-11310618
Length = 379
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 205 SEEDWHKTRNSF*SIGTRSPXRGELYNGYXGREHRTSHPLEXAADRR 345
S ++W R SF R RG ++ Y GR+ R P A RR
Sbjct: 120 SMQEWSSERCSFVQEALRGSGRGHIWAFYRGRQRRLGPPPPLPARRR 166
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 386 PRASAPPGPTPQRDYRPVPRTP 451
PR APP PTP PVP P
Sbjct: 344 PRTLAPPAPTPPAPATPVPMPP 365
>09_02_0082 - 4060018-4061604
Length = 528
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 377 MXLPRASAPPGPTPQRDYRPVPRTPIL 457
+ +PRA APP P P P+P P L
Sbjct: 249 LRVPRAPAPPVPAPLAPTPPIPTPPAL 275
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 383 LPRASAPPGPTPQRDYRPVPRTPIL 457
+PRA APP P P P+P P L
Sbjct: 360 VPRAPAPPVPAPPAPTPPIPTPPAL 384
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 383 LPRASAPPGPTPQRDYRPVPRTPI 454
+P A APP PTP + VP P+
Sbjct: 530 MPPAPAPPIPTPSMPFPTVPAPPV 553
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 386 PRASAPPGPTPQRDYRPVPRTP 451
P APP P R RP PR P
Sbjct: 39 PATEAPPAPKQHRGPRPAPRNP 60
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 383 LPRASAPPGPTPQRDYRPVPR 445
LPR+ APP P+P R PR
Sbjct: 25 LPRSRAPPSPSPSTSSRAKPR 45
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 386 PRASAPPGPTPQRDYRPVP 442
P APP P PQ+ +PVP
Sbjct: 12 PHPQAPPPPPPQQQQQPVP 30
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 383 LPRASAPPGPTPQRDYRPVPRTPI 454
LPR PP P P + P PR P+
Sbjct: 22 LPRKRPPPSPPPPQPPCPPPRRPL 45
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 350 LKYGDRVXTMXLPRASAPPGPTPQRDYRPVPRTP 451
L GD + P S P P PQ +P+PR P
Sbjct: 77 LASGDLLYFTLSPLPSPSPPPQPQPQAQPLPRNP 110
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 450 GVRGTGR*SRWGVGPGGAE 394
G G G ++WG GPGGA+
Sbjct: 84 GAGGAGGPNKWGRGPGGAD 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,657,508
Number of Sequences: 37544
Number of extensions: 164016
Number of successful extensions: 723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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