BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS302D03f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 214 6e-57 SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 186 1e-48 SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 89 4e-19 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.10 SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 31 0.10 SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.73 SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 1.3 SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.7 SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 3.0 SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 5.2 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 5.2 SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 6.8 SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 6.8 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.0 SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 9.0 >SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces pombe|chr 1|||Manual Length = 161 Score = 214 bits (523), Expect = 6e-57 Identities = 105/141 (74%), Positives = 123/141 (87%) Frame = +2 Query: 80 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 259 P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66 Query: 260 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 439 YGLVV+VLI+G L++ + LY GFI LGAGL+VG +GLAAGFAIGIVGDAGVRGTAQQP Sbjct: 67 YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQP 124 Query: 440 RLFVGMILILIXAEVXGLYGL 502 RLFV MILILI AEV GLYGL Sbjct: 125 RLFVAMILILIFAEVLGLYGL 145 >SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 162 Score = 186 bits (454), Expect = 1e-48 Identities = 86/141 (60%), Positives = 110/141 (78%) Frame = +2 Query: 80 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 259 PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII + Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66 Query: 260 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 439 YGLV++VLIAG + +Y L+ GFIHL AGLAVG +G+AAG+AIG+VGD GV+ +Q Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQD 126 Query: 440 RLFVGMILILIXAEVXGLYGL 502 R+FV M+LILI AEV GLYGL Sbjct: 127 RIFVSMVLILIFAEVLGLYGL 147 >SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces pombe|chr 1|||Manual Length = 199 Score = 89.0 bits (211), Expect = 4e-19 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 6/141 (4%) Frame = +2 Query: 98 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 277 +G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY L++A Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104 Query: 278 VLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 439 ++ + + + PA + Y GF G+ VG L G +GI G + AQ Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164 Query: 440 RLFVGMILILIXAEVXGLYGL 502 LFV ++++ I V GL+GL Sbjct: 165 SLFVKVLVVEIFGSVLGLFGL 185 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 31.1 bits (67), Expect = 0.10 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = -3 Query: 498 P*RPXTSAXIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNP 328 P RP ++A ++ PT +VP P++P MP P+A P A AP NP Sbjct: 1691 PVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746 >SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 288 Score = 31.1 bits (67), Expect = 0.10 Identities = 21/68 (30%), Positives = 30/68 (44%) Frame = +2 Query: 224 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIV 403 II +AG+IA + +++ IAG + G ++ G L LA GF I Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKIVTS 246 Query: 404 GDAGVRGT 427 GD V T Sbjct: 247 GDVCVSNT 254 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 28.3 bits (60), Expect = 0.73 Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -3 Query: 429 AVPRTPAS--PTMPMAKPAARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRTATTRP*M 256 A P P S P++PM PAA P P+A AP PL AG AP + A P Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP----PL----PAGMPAAPPLPPAAPAPPP 478 Query: 255 AIIPA 241 A PA Sbjct: 479 APAPA 483 >SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr 1|||Manual Length = 249 Score = 27.5 bits (58), Expect = 1.3 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = +2 Query: 83 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 262 +YGPF+ A+ FS Y +G G + S+ K +I A II Y Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137 Query: 263 GLVVAVLIAGAL 298 ++AVL+ G L Sbjct: 138 TTIIAVLLWGIL 149 >SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1729 Score = 27.1 bits (57), Expect = 1.7 Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%) Frame = +2 Query: 59 NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 223 +K+A ++P I F+G ++G + F+ + + ++ G S LI+ S Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483 Query: 224 IIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLY 325 + P+V++ IIA + + +++ L + + Y +Y Sbjct: 1484 VAPLVLSAIIAFFFFCLGIMLRPILGDRSKTYGVY 1518 >SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces pombe|chr 2|||Manual Length = 760 Score = 26.2 bits (55), Expect = 3.0 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -2 Query: 337 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 224 DEPF+K +L+ SN++S+ VD N+ D +D Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85 >SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 579 Score = 25.4 bits (53), Expect = 5.2 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +2 Query: 353 LAVGFSGLAAGFAIGIVGD-AGVRGTAQQPRLFVGMIL-ILIXAEVXGLYGLSSP 511 +A+G +GLA G IG+ G A A LF G+ L +I A G S+P Sbjct: 173 IAMGLAGLAGGALIGLTGGLAAPFVAAGLGTLFAGLGLGTMIGATYLGTLITSAP 227 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 25.4 bits (53), Expect = 5.2 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = -3 Query: 429 AVPRTPASPTMPMA----KPAARPENPTAKPAPK 340 +VP+ PA+P +P A +P A P P AP+ Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546 >SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1405 Score = 25.0 bits (52), Expect = 6.8 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -1 Query: 404 PRCLWRNRQPDQRILQPNQ 348 PRCLW +Q +++PN+ Sbjct: 582 PRCLWTGKQVFTVLMKPNR 600 >SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |Schizosaccharomyces pombe|chr 2|||Manual Length = 535 Score = 25.0 bits (52), Expect = 6.8 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = -1 Query: 38 TGPKNCDDYLH 6 TGP N DDY+H Sbjct: 369 TGPSNTDDYIH 379 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 24.6 bits (51), Expect = 9.0 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = -3 Query: 414 PASPTMPMAKPAARPENPTAKP 349 PA P P+ P + P P+A P Sbjct: 174 PAQPAAPVKSPPSAPSLPSAVP 195 >SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 24.6 bits (51), Expect = 9.0 Identities = 13/54 (24%), Positives = 26/54 (48%) Frame = +2 Query: 137 ALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 298 AL +G + + + P+L+ I V+ G+I + GL + + +GA+ Sbjct: 354 ALVEYFGNIDATARLGVIISKEPKLLGLYIFIGVLLGLIGVIGLFICLHFSGAM 407 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,223,196 Number of Sequences: 5004 Number of extensions: 45250 Number of successful extensions: 167 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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