Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C06f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.) 219 9e-58
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29) 28 5.4
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8) 28 5.4
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1) 27 7.1
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45) 27 9.4
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 27 9.4
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035) 27 9.4
>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 219 bits (536), Expect = 9e-58
Identities = 100/132 (75%), Positives = 117/132 (88%)
Frame = -1
Query: 431 IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 252
+ PV RP I+KKR K+FIRHQSDRY ++ +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2 VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61
Query: 251 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 72
KKTR ++P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VT
Sbjct: 62 KKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVT 121
Query: 71 NAAARLRSQENE 36
N+ ARLRS+ENE
Sbjct: 122 NSNARLRSEENE 133
>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = -1
Query: 446 TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 267
+YK++ +P +P + + + SD+ DK+K K + RV KG+ +
Sbjct: 14 SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71
Query: 266 GYGSNKKTRHMLPNGFRKV 210
G S K R +L F ++
Sbjct: 72 GRLSAKPERDVLMQDFAQI 90
>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -2
Query: 388 RDLSGINRIAMTNLRGIGVNLEVLTTESAGGS 293
+DL I A T+LR +G+N+E+L+ AGGS
Sbjct: 169 KDLMAIVFFA-TDLREVGINIELLSMLPAGGS 199
>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +3
Query: 237 MTGLLVGTVTNV--GHQV--LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRP 395
M G + T+T++ H+V L +EP A ++ T++FTP + F+ A + +RP
Sbjct: 498 MYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGINDIRP 553
>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
Length = 291
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = -1
Query: 251 KKTRHMLPN-GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 75
K+ +H+L N F VLV +++E E Q ++ EIA + ++ +L E ++ L +
Sbjct: 93 KQEKHLLYNLEFSPVLVLDLEESEKSAKQEKESDEEIARRLQAEIERLREEGSRLLQEQQ 152
Query: 74 TNAAARLRSQENE 36
A++R +E +
Sbjct: 153 ELLKAQIREEEQK 165
>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
Length = 361
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 78 SDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHH 176
S+ E GSF D++ RRDT S +C +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332
>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
Length = 550
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 309 SPQAVQGSILDAQHWLRFQQE 247
SP+A+QG ++ AQ W +QE
Sbjct: 151 SPEAIQGFLVSAQEWAIHRQE 171
>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
Length = 784
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 51 AEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHHQD 182
AEA+ R +ELL S ++LP +RR + + H D
Sbjct: 247 AEATNDFRQELSELLASARERLPFMRRSLLEIEATAQEIPTHVD 290
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 506 SNECRRRRPTRENTVAFLKETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 345
SN CR + T+E ++ + + P+ P++V RFI HQ+ + +K
Sbjct: 397 SNPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450
>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
Length = 124
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 110 SASASSKRHHERSLRSTSCFASSRFPAL*HCEL 208
S + +R +RS + ++C AS R P+ CEL
Sbjct: 21 STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,883
Number of Sequences: 59808
Number of extensions: 306156
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -