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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...   105   5e-24
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    28   0.73 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    28   0.73 
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    25   5.2  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   6.8  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   6.8  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   6.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.0  

>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score =  105 bits (251), Expect = 5e-24
 Identities = 56/124 (45%), Positives = 79/124 (63%)
 Frame = -1

Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASD 342
           PQFQQ+R ++QQNP +L  +LQQIGQ +PAL Q I+Q+ EAF+++L E     +A     
Sbjct: 254 PQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEGESA----- 308

Query: 341 ENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS 162
                   P  G Q  IQ++ ++ E+I+RL  LGF  ++VIQAY AC+KNE LAAN+L  
Sbjct: 309 -------LPSGGIQ--IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFE 359

Query: 161 QNFD 150
              +
Sbjct: 360 HGHE 363


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 344 DENVADIQQPQLGSQNVIQV-SAQDKEAIERLKALGFPEHMVIQAYFACEK 195
           D  ++ +  P+    +V++  SA  + A  RLK LG  +  ++     CEK
Sbjct: 442 DNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQKAILCTLVVCEK 492


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 503 RAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPV 372
           R V Q++   LN ++ Q   T P  ++ I  ++E  +   N P+
Sbjct: 624 RTVAQRHKEQLNQLMNQFNSTQPHFIRCIVPNEEKKMHTFNRPL 667


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -1

Query: 386 LNEPVNPSAAGVASDENVADI---QQPQLGSQNVIQVS-AQDKEAIERLKALGFPEHMVI 219
           L + V P+A+ + +DE  +D+   ++   GS N      +  + +  R +  G P  + +
Sbjct: 18  LTQEVRPTASQIIADEEASDLDEYEEDLEGSGNEDDFGPSMSRSSRGRKRRKGDP--LEL 75

Query: 218 QAYFACEKNENLAANFLL 165
           Q+ F  E+NE  A NF L
Sbjct: 76  QSQFE-ERNETDAINFQL 92


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 380 EPVNPSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYF 207
           +P +  + G +    V  I+   + S N +++S+Q  +    L     PE  V   YF
Sbjct: 642 KPSHSDSKGFSRGVGVVGIKPKNIKSSNTVKLSSQQLKKESVLLNCTIPEFNVSNTYF 699


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 275 DKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFDD*VLD 135
           ++ AIE+L+A+GFP     +A  A   ++   A   L ++ +D  +D
Sbjct: 578 NQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMEDPEID 624


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
 Frame = +2

Query: 197  FHKQNRLVSPYVQENQELLIFXXXXXXXXXXXXHSVTLIEV-----VEYQQ-HSHLMLLP 358
            F K+ R  S  + E++++ +             HSV   ++     VE++  +  + LL 
Sbjct: 1428 FLKRFRRSSSTIYEHRQIWLDIMIKYLEDLRLQHSVKETQINDLPLVEFKYVYKEISLLD 1487

Query: 359  QQKGSLVHLTF*QRLLDVG*LLVIKLD 439
            +QK SL+H  +  R L+ G    IK+D
Sbjct: 1488 EQKLSLLHQVYEIRKLNNGLYPTIKVD 1514


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 428  LQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQP 315
            + ++S HQ    +M NE  + S+  V  DE+   ++ P
Sbjct: 1756 IPIVSNHQTEGSQMFNEISSVSSIHVYHDESQPPVEMP 1793


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 506 MRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQE 402
           +R +++  PN+ NA+  Q   + P+L+  +  H E
Sbjct: 666 LRQILRVTPNIANAICDQF-DSIPSLIHHLKTHGE 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,798
Number of Sequences: 5004
Number of extensions: 31081
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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