BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS302A11f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 105 5e-24 SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 28 0.73 SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 0.73 SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 25 5.2 SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 6.8 SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 6.8 SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 6.8 SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.0 SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 9.0 >SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pombe|chr 2|||Manual Length = 368 Score = 105 bits (251), Expect = 5e-24 Identities = 56/124 (45%), Positives = 79/124 (63%) Frame = -1 Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASD 342 PQFQQ+R ++QQNP +L +LQQIGQ +PAL Q I+Q+ EAF+++L E +A Sbjct: 254 PQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEGESA----- 308 Query: 341 ENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS 162 P G Q IQ++ ++ E+I+RL LGF ++VIQAY AC+KNE LAAN+L Sbjct: 309 -------LPSGGIQ--IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFE 359 Query: 161 QNFD 150 + Sbjct: 360 HGHE 363 >SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 28.3 bits (60), Expect = 0.73 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = -1 Query: 344 DENVADIQQPQLGSQNVIQV-SAQDKEAIERLKALGFPEHMVIQAYFACEK 195 D ++ + P+ +V++ SA + A RLK LG + ++ CEK Sbjct: 442 DNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQKAILCTLVVCEK 492 >SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces pombe|chr 3|||Manual Length = 1526 Score = 28.3 bits (60), Expect = 0.73 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = -1 Query: 503 RAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPV 372 R V Q++ LN ++ Q T P ++ I ++E + N P+ Sbjct: 624 RTVAQRHKEQLNQLMNQFNSTQPHFIRCIVPNEEKKMHTFNRPL 667 >SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 328 Score = 25.4 bits (53), Expect = 5.2 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Frame = -1 Query: 386 LNEPVNPSAAGVASDENVADI---QQPQLGSQNVIQVS-AQDKEAIERLKALGFPEHMVI 219 L + V P+A+ + +DE +D+ ++ GS N + + + R + G P + + Sbjct: 18 LTQEVRPTASQIIADEEASDLDEYEEDLEGSGNEDDFGPSMSRSSRGRKRRKGDP--LEL 75 Query: 218 QAYFACEKNENLAANFLL 165 Q+ F E+NE A NF L Sbjct: 76 QSQFE-ERNETDAINFQL 92 >SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schizosaccharomyces pombe|chr 2|||Manual Length = 766 Score = 25.0 bits (52), Expect = 6.8 Identities = 14/58 (24%), Positives = 25/58 (43%) Frame = -1 Query: 380 EPVNPSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYF 207 +P + + G + V I+ + S N +++S+Q + L PE V YF Sbjct: 642 KPSHSDSKGFSRGVGVVGIKPKNIKSSNTVKLSSQQLKKESVLLNCTIPEFNVSNTYF 699 >SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Schizosaccharomyces pombe|chr 2|||Manual Length = 775 Score = 25.0 bits (52), Expect = 6.8 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -1 Query: 275 DKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFDD*VLD 135 ++ AIE+L+A+GFP +A A ++ A L ++ +D +D Sbjct: 578 NQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMEDPEID 624 >SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1630 Score = 25.0 bits (52), Expect = 6.8 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Frame = +2 Query: 197 FHKQNRLVSPYVQENQELLIFXXXXXXXXXXXXHSVTLIEV-----VEYQQ-HSHLMLLP 358 F K+ R S + E++++ + HSV ++ VE++ + + LL Sbjct: 1428 FLKRFRRSSSTIYEHRQIWLDIMIKYLEDLRLQHSVKETQINDLPLVEFKYVYKEISLLD 1487 Query: 359 QQKGSLVHLTF*QRLLDVG*LLVIKLD 439 +QK SL+H + R L+ G IK+D Sbjct: 1488 EQKLSLLHQVYEIRKLNNGLYPTIKVD 1514 >SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|Schizosaccharomyces pombe|chr 1|||Manual Length = 2397 Score = 24.6 bits (51), Expect = 9.0 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = -1 Query: 428 LQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQP 315 + ++S HQ +M NE + S+ V DE+ ++ P Sbjct: 1756 IPIVSNHQTEGSQMFNEISSVSSIHVYHDESQPPVEMP 1793 >SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Schizosaccharomyces pombe|chr 1|||Manual Length = 738 Score = 24.6 bits (51), Expect = 9.0 Identities = 10/35 (28%), Positives = 20/35 (57%) Frame = -1 Query: 506 MRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQE 402 +R +++ PN+ NA+ Q + P+L+ + H E Sbjct: 666 LRQILRVTPNIANAICDQF-DSIPSLIHHLKTHGE 699 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,827,798 Number of Sequences: 5004 Number of extensions: 31081 Number of successful extensions: 103 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 102 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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