Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 100 8e-22
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 96 1e-20
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 95 2e-20
02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440... 91 5e-19
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 31 0.56
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 29 2.3
01_07_0028 - 40588611-40588718,40588812-40588901,40589966-405901... 28 5.2
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 27 6.9
10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072... 27 9.1
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 100 bits (239), Expect = 8e-22
Identities = 47/124 (37%), Positives = 81/124 (65%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASD 342
PQFQ + A++Q NP +L +LQ++G+ NP +L++I ++Q F+R++NE + AAG
Sbjct: 291 PQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGAAG---- 346
Query: 341 ENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS 162
N+ + Q + V+ +++EAI+RL+A+GF +V++ +FAC K+E LAAN+LL
Sbjct: 347 GNI--LGQLAAAMPQALTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLD 404
Query: 161 QNFD 150
+
Sbjct: 405 HGHE 408
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 96.3 bits (229), Expect = 1e-20
Identities = 52/126 (41%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Frame = -1
Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339
QF+ + +++Q NP +L +LQ++G+ NP +LQ+I ++Q F+ ++NEP A G +E
Sbjct: 270 QFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEP----AEG-DDEE 324
Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS- 162
N+ D Q P+ Q I V+ ++ EAI RL+A+GF +V+ +FAC K+E LAAN+LL
Sbjct: 325 NLLD-QFPEAMPQ-TIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDH 382
Query: 161 -QNFDD 147
FDD
Sbjct: 383 MNEFDD 388
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 95.5 bits (227), Expect = 2e-20
Identities = 47/126 (37%), Positives = 80/126 (63%), Gaps = 2/126 (1%)
Frame = -1
Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339
QF+ + +++Q NP +L +LQ++G+ NP +LQ+I ++Q F+R++NEP ++
Sbjct: 282 QFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAE------GAEG 335
Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS- 162
N+ D Q G + V+ ++ EAI+RL+ +GF +V++ +FAC K+E LAAN+LL
Sbjct: 336 NLLD--QFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDELLAANYLLDH 393
Query: 161 -QNFDD 147
FDD
Sbjct: 394 MNEFDD 399
>02_01_0593 +
4408229-4408294,4408764-4409096,4409756-4409794,
4409870-4409937,4410024-4410068,4410478-4410655,
4410740-4410871,4410941-4411009,4411258-4411305,
4411498-4411545,4411654-4411763,4412044-4412125,
4412232-4412345
Length = 443
Score = 91.1 bits (216), Expect = 5e-19
Identities = 45/123 (36%), Positives = 78/123 (63%)
Frame = -1
Query: 515 FQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDEN 336
FQ +R ++ NP +L +LQ++ + NP LL++I ++ + F++++NEP + +D +
Sbjct: 327 FQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPFD------GADGD 380
Query: 335 VADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQN 156
D Q Q + I V+ +++EAI RL+ +GF VI+A+FAC++NE LAAN+LL
Sbjct: 381 FLD-QPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANYLLEHA 439
Query: 155 FDD 147
D+
Sbjct: 440 ADE 442
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 31.1 bits (67), Expect = 0.56
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -1
Query: 488 QNPNLLN-AVLQQIGQTNPALLQVISQHQEAFVRMLNEP-VNPSAAGVASDENVADIQQP 315
Q P L + +QQ + ALLQ Q Q+ ++ L++P V +N+ P
Sbjct: 612 QQPTLTQTSQVQQAAEYQQALLQSQQQQQQLQLQQLSQPEVQLQLLQKIQQQNMLSQLNP 671
Query: 314 QLGSQNVIQVSAQDKEAIER 255
Q SQ + Q+S + +E +++
Sbjct: 672 QHQSQLIQQLSQKSQEILQQ 691
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNL----LNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAG 354
P+ QM+ + QNPNL +N + Q NP L++ + + +++ NP A
Sbjct: 156 PELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDR--NPDLAH 213
Query: 353 VASDENV 333
V +D +V
Sbjct: 214 VLNDPSV 220
>01_07_0028 -
40588611-40588718,40588812-40588901,40589966-40590125,
40590547-40590595,40591158-40591338
Length = 195
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 272 KEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS 162
+E +++L +GFPE MV + +EN+A L S
Sbjct: 158 EEKVQKLVEMGFPEDMVRSVLKSVNGDENMALEKLCS 194
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASD 342
P F QM +Q+NP+ LN L ++P ++QV+ MLN + A +S
Sbjct: 158 PDFMQMLRDVQRNPSSLNMYL-----SDPRMMQVLG-------LMLNIKIQRPEASESSQ 205
Query: 341 ENVADIQQPQ 312
+ + QPQ
Sbjct: 206 PSSSPPSQPQ 215
>10_08_1027 -
22404169-22404807,22406148-22406360,22407062-22407255,
22407422-22407566,22407801-22407875,22408222-22408380,
22408466-22408645,22408756-22409243,22409375-22409738,
22409811-22409943,22410023-22410153,22410247-22410354,
22410451-22410897,22411425-22411514,22411607-22411915,
22412209-22412320,22412488-22412699
Length = 1332
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 404 EAFVRMLNEPVNPSAAGVASDENVADIQQPQLGSQNVIQVSAQ 276
EA + +LN+ N S ++S ENVA S++V+Q+ Q
Sbjct: 289 EALIVVLNDKENLSELDISSVENVALCSGGNSSSEHVLQMLRQ 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,465,464
Number of Sequences: 37544
Number of extensions: 163806
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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