BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS302A11f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 111 2e-25 At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 109 1e-24 At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 106 8e-24 At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 103 6e-23 At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 103 6e-23 At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 82 3e-16 At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 30 1.1 At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) i... 27 7.7 >At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain; Length = 419 Score = 111 bits (268), Expect = 2e-25 Identities = 54/119 (45%), Positives = 82/119 (68%), Gaps = 1/119 (0%) Frame = -1 Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSA-AGVASD 342 QFQ +RA++Q NP +L +LQ++G+ NP L+++I HQ F+R++NEPV +G Sbjct: 298 QFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLG 357 Query: 341 ENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 165 + A + QPQ IQV+ +++EAIERL+A+GF +V++ +FAC KNE LAAN+LL Sbjct: 358 QMAAGMPQPQ-----AIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLL 411 >At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform I GI:1914683 from [Daucus carota] Length = 378 Score = 109 bits (262), Expect = 1e-24 Identities = 53/126 (42%), Positives = 84/126 (66%), Gaps = 2/126 (1%) Frame = -1 Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339 QFQ +RA++Q NP +L +LQ++G+ NP L+++I +HQ F+R++NEPV +E Sbjct: 261 QFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-------GEE 313 Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS- 162 NV ++Q + + V+ +++EAIERL+ +GF MV++ +FAC KNE LAAN+LL Sbjct: 314 NV--MEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDH 371 Query: 161 -QNFDD 147 F+D Sbjct: 372 MHEFED 377 >At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI:1914685 from [Daucus carota] Length = 368 Score = 106 bits (255), Expect = 8e-24 Identities = 49/123 (39%), Positives = 83/123 (67%) Frame = -1 Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339 QFQQ+R+++ NP +L +LQ++G+ NP LL++I ++Q F+++LNEP SD Sbjct: 249 QFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYE------GSDG 302 Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQ 159 +V QP + + V+ +++E+IERL+A+GF +VI+A+ +C++NE LAAN+LL Sbjct: 303 DVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEH 362 Query: 158 NFD 150 + D Sbjct: 363 SAD 365 >At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI:1914685 from [Daucus carota]; contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain Length = 365 Score = 103 bits (248), Expect = 6e-23 Identities = 49/123 (39%), Positives = 80/123 (65%) Frame = -1 Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339 QFQQ+R ++ NP +L +LQ++G+ NP LL++I ++Q F++++NEP SD Sbjct: 246 QFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYE------GSDG 299 Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQ 159 QP+ + I V+ ++EAI+RL+A+GF +VI+A+ AC++NE LAAN+LL Sbjct: 300 EGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN 359 Query: 158 NFD 150 + D Sbjct: 360 SGD 362 >At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI:1914685 from [Daucus carota]; contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain Length = 371 Score = 103 bits (248), Expect = 6e-23 Identities = 49/123 (39%), Positives = 80/123 (65%) Frame = -1 Query: 518 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 339 QFQQ+R ++ NP +L +LQ++G+ NP LL++I ++Q F++++NEP SD Sbjct: 252 QFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYE------GSDG 305 Query: 338 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQ 159 QP+ + I V+ ++EAI+RL+A+GF +VI+A+ AC++NE LAAN+LL Sbjct: 306 EGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN 365 Query: 158 NFD 150 + D Sbjct: 366 SGD 368 >At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI:1914685 from [Daucus carota]; contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain Length = 351 Score = 81.8 bits (193), Expect = 3e-16 Identities = 40/103 (38%), Positives = 66/103 (64%) Frame = -1 Query: 458 QQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQPQLGSQNVIQVSA 279 Q++G+ NP LL++I ++Q F++++NEP SD QP+ + I V+ Sbjct: 252 QELGKQNPQLLRLIQENQAEFLQLVNEPYE------GSDGEGDMFDQPEQEMPHAINVTP 305 Query: 278 QDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFD 150 ++EAI+RL+A+GF +VI+A+ AC++NE LAAN+LL + D Sbjct: 306 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGD 348 >At3g13235.1 68416.m01666 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain Length = 414 Score = 29.9 bits (64), Expect = 1.1 Identities = 23/67 (34%), Positives = 29/67 (43%) Frame = -1 Query: 368 PSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNE 189 PS + VA+ Q QN + + + I +L LGF VIQA E NE Sbjct: 346 PSGFTEKKNNTVANPTSQQPKRQNTSE-GPEFEAKIAKLVELGFSRDSVIQALKLFEGNE 404 Query: 188 NLAANFL 168 AA FL Sbjct: 405 EQAAGFL 411 >At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) identical to CTD phosphatase-like 3 (CPL3) [Arabidopsis thaliana] GI:22212705; contains Pfam profile PF03031: NLI interacting factor Length = 1241 Score = 27.1 bits (57), Expect = 7.7 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = -1 Query: 440 NPALLQVISQHQEAFVRMLNEPVNPSA----AGVASDENVADIQQPQLG 306 N Q +S +Q+ + +N+ ++ SA AG +S+ENV + QP G Sbjct: 278 NDHFSQFLSFNQKNEIETMNQDLSRSAIAVFAGTSSEENVNQMTQPSNG 326 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,070,777 Number of Sequences: 28952 Number of extensions: 147272 Number of successful extensions: 425 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 415 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 419 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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