BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS302A08f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 120 1e-28 SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 27 1.7 SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 1.7 SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 26 3.0 SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 26 3.0 SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 25 5.2 SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 9.0 >SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 942 Score = 120 bits (289), Expect = 1e-28 Identities = 54/102 (52%), Positives = 74/102 (72%) Frame = +1 Query: 154 KGLAVFTSGGDSQGMNAAVRSVVRMGIYLGCKVYFIREGYQGMVDGGDNIEEANWSSVSS 333 K +AV TSGGDS GMNA VR+V R+ I+ GC + I EGY+G+V GGD I++ W V Sbjct: 195 KKIAVMTSGGDSPGMNAVVRAVARIAIHRGCDAFAIYEGYEGLVQGGDMIKQLQWGDVRG 254 Query: 334 IIHKGGTIIGSARCMEFIKKEGRLKAAYNLMSRGITNLVVIG 459 + +GGT+IG+ARCM F ++ GRL+AA NL+S GI +++V G Sbjct: 255 WLAEGGTLIGTARCMAFRERPGRLRAAKNLISAGIDSIIVCG 296 >SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 885 Score = 27.1 bits (57), Expect = 1.7 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +1 Query: 43 TKNNLN*LFIIEDYNILITTMDGSATQKFIGRGSHKGKGLAVFTSGGDSQGMN 201 +KN N +F ++DY +L T D S +K S + + V+TS +G + Sbjct: 528 SKNLPNQIFAVKDYKVLPLTGDNSIFEKI----SQEANSIFVYTSETKVEGFS 576 >SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual Length = 674 Score = 27.1 bits (57), Expect = 1.7 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = -1 Query: 299 LSPPSTMPWYPSRIKYTLHPKYMPIR 222 + PP+ +PWYP + Y + + IR Sbjct: 95 IPPPTVLPWYPDGLAYIVDAQKDVIR 120 >SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces pombe|chr 1|||Manual Length = 143 Score = 26.2 bits (55), Expect = 3.0 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Frame = +1 Query: 139 GSHKGKGLAVFTSGGDSQGMNAAVRSVVRMG-IYLGCKV--YFIREGYQGMVDGGDNI 303 GS KG+ V G +++ N+A+R VR+ I G KV + +G VD D + Sbjct: 43 GSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEV 100 >SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosaccharomyces pombe|chr 2|||Manual Length = 143 Score = 26.2 bits (55), Expect = 3.0 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Frame = +1 Query: 139 GSHKGKGLAVFTSGGDSQGMNAAVRSVVRMG-IYLGCKV--YFIREGYQGMVDGGDNI 303 GS KG+ V G +++ N+A+R VR+ I G KV + +G VD D + Sbjct: 43 GSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEV 100 >SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosaccharomyces pombe|chr 3|||Manual Length = 478 Score = 25.4 bits (53), Expect = 5.2 Identities = 18/78 (23%), Positives = 33/78 (42%) Frame = +1 Query: 271 YQGMVDGGDNIEEANWSSVSSIIHKGGTIIGSARCMEFIKKEGRLKAAYNLMSRGITNLV 450 YQ + D E+ ++ S ++ GGT G R +++IK G + + + I+ Sbjct: 25 YQVLTDRFALDEDNFYAKASGNLYLGGTWKGITRNLDYIKSLGCTAIWISPIVKNISETT 84 Query: 451 VIGX*WFADWCQFXSDKN 504 G + W Q + N Sbjct: 85 DCGQAYHGYWAQDMTQLN 102 >SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 1254 Score = 24.6 bits (51), Expect = 9.0 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 326 TEDQFASSMLSPPSTMPWYPSRIKYTLH 243 TE +SSML PPS+ P + S + +LH Sbjct: 87 TEIDSSSSMLPPPSSDP-FSSPLSSSLH 113 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,080,258 Number of Sequences: 5004 Number of extensions: 40685 Number of successful extensions: 85 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 85 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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