BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS302A08f (521 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY705395-1|AAU12504.1| 569|Anopheles gambiae nicotinic acetylch... 23 8.2 AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 23 8.2 >AY705395-1|AAU12504.1| 569|Anopheles gambiae nicotinic acetylcholine receptor subunitalpha 2 protein. Length = 569 Score = 22.6 bits (46), Expect = 8.2 Identities = 7/20 (35%), Positives = 15/20 (75%) Frame = -3 Query: 300 VITSIYHALVSFTNKIYFTP 241 V+T++ A++ +T K+ +TP Sbjct: 133 VVTTLTKAILHYTGKVIWTP 152 >AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase protein. Length = 1022 Score = 22.6 bits (46), Expect = 8.2 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -1 Query: 263 RIKYTLHPKYMPIRTTDRTAAFI 195 R++YT H KY+ R T A + Sbjct: 724 RLEYTQHIKYVAERAVTNTNALV 746 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 523,142 Number of Sequences: 2352 Number of extensions: 10382 Number of successful extensions: 20 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 20 length of database: 563,979 effective HSP length: 60 effective length of database: 422,859 effective search space used: 47783067 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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