BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS301H11f (366 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 125 2e-30 SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 0.52 SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 28 0.52 SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 0.69 SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 1.6 SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|... 26 2.1 SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 2.1 SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 2.8 SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 3.7 SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 25 3.7 SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 24 6.4 SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 8.5 SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 24 8.5 SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 24 8.5 SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 24 8.5 SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 24 8.5 >SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|Schizosaccharomyces pombe|chr 1|||Manual Length = 590 Score = 125 bits (302), Expect = 2e-30 Identities = 60/87 (68%), Positives = 75/87 (86%) Frame = +1 Query: 103 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLAL 282 LYPIAVLIDELK++++ RLN++++LSTIALALG ERT+ ELIPFL E+I DEDEVL AL Sbjct: 10 LYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSAL 69 Query: 283 AEQLGSFINLVGGGEFAHCLLPPLETL 363 A+QLG+F++ VGG E+AH LL PLE L Sbjct: 70 ADQLGNFVDYVGGPEYAHVLLSPLENL 96 Score = 36.3 bits (80), Expect = 0.001 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Frame = +1 Query: 103 LYPIAVLIDELKNEDVQ-LRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLL 276 L I +I EL N+ Q +R + +A LG E+T L+P E + DE+ EV L Sbjct: 321 LEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRL 380 Query: 277 ALAEQLGSFINLVGGGEFAHCLLPPLETL 363 + +L +VG + LLP + TL Sbjct: 381 NIISKLEVVNKVVGIELLSQSLLPAIVTL 409 Score = 35.9 bits (79), Expect = 0.002 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +1 Query: 106 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLLAL 282 Y + + ++ LK+E+ ++RLN I KL + +G+E L+P + D+ V LA+ Sbjct: 362 YLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAI 421 Query: 283 AEQL 294 + + Sbjct: 422 IDYI 425 >SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 350 Score = 27.9 bits (59), Expect = 0.52 Identities = 13/50 (26%), Positives = 29/50 (58%) Frame = +1 Query: 64 IKMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVER 213 + + SD TDES++P+ + +++++D + +S L + A+A G + Sbjct: 56 VNYSMSDE-TDESMFPLDSELTDMEDDDTEYISDSTTDLPSAAMARGTRQ 104 >SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor Ste6|Schizosaccharomyces pombe|chr 3|||Manual Length = 911 Score = 27.9 bits (59), Expect = 0.52 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +1 Query: 166 SIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLV 315 SIKK T + G+E +S ++ F + DE L+ Q+ S +NL+ Sbjct: 138 SIKKEGTQVIVFGIETVRSMVLSFPLIILSTLDENFLSEVAQVFSSLNLL 187 >SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schizosaccharomyces pombe|chr 2|||Manual Length = 689 Score = 27.5 bits (58), Expect = 0.69 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +1 Query: 130 ELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS 300 EL+NE +Q LNS K L T L E ++L+ FL T + E + +L QL + Sbjct: 295 ELENEKIQTELNSWKSLITNELPT-PEAVSNKLV-FLQNTNANLGERVSSLESQLSN 349 >SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1568 Score = 26.2 bits (55), Expect = 1.6 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Frame = +1 Query: 160 LNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS-FINLVGGGEFAH 336 +NS KK + + V T E IPF + D+ A+ L F NLV GE A+ Sbjct: 595 VNSQKKTAPEVSPISV--TLIEQIPFFLQKRDISDDSKDAVLSWLSDLFSNLVCTGEDAN 652 Query: 337 CLLPPLETL 363 CL LE + Sbjct: 653 CLFHLLENV 661 >SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 146 Score = 25.8 bits (54), Expect = 2.1 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = -1 Query: 210 LHAQSQRDRRQLLYR---VQTKLYILILQLIYENGNRIQ*FIRPG 85 LH Q R L Y+ + T+LY +L+ Y +GN I + +PG Sbjct: 52 LHHQRSRYIYDLYYKREAISTELYNWLLKQNYADGNLIAKWKKPG 96 >SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1428 Score = 25.8 bits (54), Expect = 2.1 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +1 Query: 187 IALALGVERTKSELIPFLTETIYDEDEVL 273 + L +E+ K E++PFL Y +EVL Sbjct: 473 LVLKSSIEKEKVEIVPFLDIRKYSPNEVL 501 >SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 366 Score = 25.4 bits (53), Expect = 2.8 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -1 Query: 231 DQLRFSPLHAQSQRDRRQLLYRVQTKLYI 145 D +F+P S R+ LLYR++ KL + Sbjct: 153 DNEKFNPEVISSLASRQDLLYRIRDKLLV 181 >SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1373 Score = 25.0 bits (52), Expect = 3.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -1 Query: 234 RDQLRFSPLHAQSQRDRRQLLYRVQ 160 RD+L F +A+ +RD R L R+Q Sbjct: 578 RDELNFDQPNAEQERDIRDLQERLQ 602 >SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosaccharomyces pombe|chr 3|||Manual Length = 436 Score = 25.0 bits (52), Expect = 3.7 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 118 VLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSE 225 VL+ + KN +KK S + A G+E+TK+E Sbjct: 105 VLLVKQKNTGRLFAQKQLKKASIVLRAKGLEQTKNE 140 >SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1063 Score = 24.2 bits (50), Expect = 6.4 Identities = 13/44 (29%), Positives = 26/44 (59%) Frame = +1 Query: 130 ELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDE 261 +L NE + + +K+ T+ LAL ++ K+++ LT+ +DE Sbjct: 970 DLGNE-INSEIGFLKEPDTMNLALDADKDKTKMQNKLTQINFDE 1012 >SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces pombe|chr 1|||Manual Length = 635 Score = 23.8 bits (49), Expect = 8.5 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 166 SIKKLSTIALALGVERTKSELIPFLTETI 252 S+ KLS I+ +GVE +E + F+ E+I Sbjct: 298 SLVKLSGISSLMGVESYLAERLRFIGESI 326 >SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination repair protein Sfr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 299 Score = 23.8 bits (49), Expect = 8.5 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 160 NEAVHPHSSAHL*ERQSDTMIHPSRSRSLPF 68 +E VHP + L DT IH S + PF Sbjct: 61 SETVHPENEKALTPDLRDTKIHTSLPITTPF 91 >SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces pombe|chr 1|||Manual Length = 1679 Score = 23.8 bits (49), Expect = 8.5 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 121 LIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDE 267 L+ L++E +R++ + LS I R +EL+P L I+D E Sbjct: 364 LLTSLQSELPDVRVSIDEALSIIIPYYSNFRFSNELLPVLEPFIFDSPE 412 >SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 433 Score = 23.8 bits (49), Expect = 8.5 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +1 Query: 247 TIYDEDEVLLALAEQLGSFIN 309 TIY D +LLA+ L +++N Sbjct: 209 TIYHADTILLAVGAYLNAYLN 229 >SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosaccharomyces pombe|chr 1|||Manual Length = 859 Score = 23.8 bits (49), Expect = 8.5 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 172 KKLSTIALALGVERTKSELIPFLTETIYDEDEVLLA 279 K L T+ L + K+E+ + T+Y+EDEVL A Sbjct: 172 KSLFTLRQPLFFQPRKTEIC--IAITMYNEDEVLFA 205 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,260,549 Number of Sequences: 5004 Number of extensions: 19591 Number of successful extensions: 79 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 79 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 114084208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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