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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H10f
         (336 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    80   3e-16
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    80   3e-16
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     80   4e-16
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    79   6e-16
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    79   6e-16
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       79   7e-16
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co...    38   0.002
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    28   1.8  
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor...    27   2.4  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    27   3.1  
At1g29120.2 68414.m03565 expressed protein                             27   4.1  
At1g29120.1 68414.m03564 expressed protein                             27   4.1  
At1g09575.1 68414.m01074 expressed protein contains Pfam domain,...    26   5.4  
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei...    26   7.2  
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...    26   7.2  
At1g32600.1 68414.m04023 F-box family protein-related contains T...    26   7.2  
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    25   9.5  
At2g31160.1 68415.m03804 expressed protein contains Pfam profile...    25   9.5  

>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 35/66 (53%), Positives = 49/66 (74%)
 Frame = +3

Query: 54  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 234 TNIGSG 251
            N+G+G
Sbjct: 61  MNVGAG 66


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 35/66 (53%), Positives = 49/66 (74%)
 Frame = +3

Query: 54  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 234 TNIGSG 251
            N+G+G
Sbjct: 61  MNVGAG 66


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 36/65 (55%), Positives = 47/65 (72%)
 Frame = +3

Query: 57  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 236
           +S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK  E  N+ DLI 
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 237 NIGSG 251
           N+G+G
Sbjct: 61  NVGAG 65


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 35/66 (53%), Positives = 48/66 (72%)
 Frame = +3

Query: 54  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 234 TNIGSG 251
            N+G+G
Sbjct: 61  MNVGAG 66


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 35/66 (53%), Positives = 48/66 (72%)
 Frame = +3

Query: 54  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 234 TNIGSG 251
            N+G+G
Sbjct: 61  MNVGAG 66


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 79.0 bits (186), Expect = 7e-16
 Identities = 35/66 (53%), Positives = 48/66 (72%)
 Frame = +3

Query: 54  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 234 TNIGSG 251
            N+G+G
Sbjct: 61  MNVGAG 66


>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
           contains weak similarity to Swiss-Prot:52855 60S acidic
           ribosomal protein P1 (L12) [Zea mays]
          Length = 46

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +3

Query: 57  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 191
           ++  ELAC Y+AL+L D    VT   +ST++K A +++E YWP L
Sbjct: 1   MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 205 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 98
           +  +N P  + S  TAA  KM +I SP+T +S   R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317


>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
           chloroplast, putative / Mg-protoporphyrin IX chelatase,
           putative similar to SP|P161127 from Arabidopsis
           thaliana, SP|P93162 from Glycine max, SP|O22436 from
           Nicotiana tabacum; non-consensus AA donor splice site at
           exon 1, TG acceptor splice site at exon 2
          Length = 418

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 51  KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 215
           K+    EL+ + + + +VD  +  T +++     I KA    V+ + PGL AKA  GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = +3

Query: 21  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 200
           G +++   K  +++  ++     ++  V   + V G+ + T   A  ++  P W  +   
Sbjct: 203 GPQKVKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPEWIAIVGS 262

Query: 201 ALEGINVRDLITNIGSGV 254
              G+   D+ T +GS V
Sbjct: 263 GYIGLEFSDVYTALGSEV 280


>At1g29120.2 68414.m03565 expressed protein
          Length = 455

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 33  LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 176
           LA S   + S+  +A +YSA +    DVAV+    S +L+     +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223


>At1g29120.1 68414.m03564 expressed protein
          Length = 455

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 33  LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 176
           LA S   + S+  +A +YSA +    DVAV+    S +L+     +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223


>At1g09575.1 68414.m01074 expressed protein contains Pfam domain,
           PF04678: Protein of unknown function, DUF607
          Length = 292

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 242 DVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDE 93
           DV    T ++A QG G    P   ++++R   D G  L     + +H D+
Sbjct: 78  DVVSYSTLLEASQGMGIARSPDEAHVFARVLDDAGVVLIFRDKVYLHPDK 127


>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
            contains Pfam profiles: PF02538 hydantoinase
            B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
            PF05378 hydantoinase/oxoprolinase N-terminal region
          Length = 1266

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 194  EQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 87
            EQ +P+ L+ +  R   GGN L   G+ ++ + E R
Sbjct: 1161 EQRYPVLLHRFGLRENSGGNGLHKGGDGLVREIEFR 1196


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 186 GLFAKALEGINVRDLIT 236
           GL   AL+GINVR+++T
Sbjct: 316 GLLPAALQGINVREMLT 332


>At1g32600.1 68414.m04023 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           identical to hypothetical protein GB:AAF25964 GI:6714268
           from [Arabidopsis thaliana]
          Length = 293

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 57  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 224
           VS+ EL CV +    VDD++ V   +I +  K A  D +P W  +     E +++R
Sbjct: 186 VSRGEL-CVINHYPSVDDNLCVCRREIRSGKKIARWDSDP-WMNVAGNDDEPVDIR 239


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mutase
            family protein similar to X4 protein GI:21386798, Y4
            protein GI:21386800 from  [Silene dioica]; contains Pfam
            profiles PF00300: phosphoglycerate mutase family,
            PF01535: PPR repeat
          Length = 1053

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 131  ENFHHLESGGCRC 169
            + FHH + GGC C
Sbjct: 1037 KRFHHFKDGGCSC 1049


>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 219

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 229 RSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 86
           ++R +   K    RP    STS+++A    + F  +  TSS+T+++ E
Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,346,192
Number of Sequences: 28952
Number of extensions: 123893
Number of successful extensions: 320
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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