BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS301H10f (336 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 80 3e-16 At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 80 3e-16 At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 80 4e-16 At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 79 6e-16 At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 79 6e-16 At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 79 7e-16 At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.002 At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 28 1.8 At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 27 2.4 At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 3.1 At1g29120.2 68414.m03565 expressed protein 27 4.1 At1g29120.1 68414.m03564 expressed protein 27 4.1 At1g09575.1 68414.m01074 expressed protein contains Pfam domain,... 26 5.4 At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei... 26 7.2 At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative... 26 7.2 At1g32600.1 68414.m04023 F-box family protein-related contains T... 26 7.2 At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 25 9.5 At2g31160.1 68415.m03804 expressed protein contains Pfam profile... 25 9.5 >At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B) similar to acidic ribosomal protein p1 Length = 113 Score = 80.2 bits (189), Expect = 3e-16 Identities = 35/66 (53%), Positives = 49/66 (74%) Frame = +3 Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233 M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60 Query: 234 TNIGSG 251 N+G+G Sbjct: 61 MNVGAG 66 >At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B) similar to acidic ribosomal protein p1 Length = 113 Score = 80.2 bits (189), Expect = 3e-16 Identities = 35/66 (53%), Positives = 49/66 (74%) Frame = +3 Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233 M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60 Query: 234 TNIGSG 251 N+G+G Sbjct: 61 MNVGAG 66 >At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative Length = 111 Score = 79.8 bits (188), Expect = 4e-16 Identities = 36/65 (55%), Positives = 47/65 (72%) Frame = +3 Query: 57 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 236 +S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60 Query: 237 NIGSG 251 N+G+G Sbjct: 61 NVGAG 65 >At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A) similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095 from [Arabidopsis thaliana] Length = 112 Score = 79.4 bits (187), Expect = 6e-16 Identities = 35/66 (53%), Positives = 48/66 (72%) Frame = +3 Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233 M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60 Query: 234 TNIGSG 251 N+G+G Sbjct: 61 MNVGAG 66 >At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A) similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095 from [Arabidopsis thaliana] Length = 112 Score = 79.4 bits (187), Expect = 6e-16 Identities = 35/66 (53%), Positives = 48/66 (72%) Frame = +3 Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233 M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60 Query: 234 TNIGSG 251 N+G+G Sbjct: 61 MNVGAG 66 >At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) Length = 113 Score = 79.0 bits (186), Expect = 7e-16 Identities = 35/66 (53%), Positives = 48/66 (72%) Frame = +3 Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233 M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60 Query: 234 TNIGSG 251 N+G+G Sbjct: 61 MNVGAG 66 >At3g49460.1 68416.m05406 60S acidic ribosomal protein-related contains weak similarity to Swiss-Prot:52855 60S acidic ribosomal protein P1 (L12) [Zea mays] Length = 46 Score = 37.9 bits (84), Expect = 0.002 Identities = 20/45 (44%), Positives = 30/45 (66%) Frame = +3 Query: 57 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 191 ++ ELAC Y+AL+L D VT +ST++K A +++E YWP L Sbjct: 1 MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39 >At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434 Length = 324 Score = 27.9 bits (59), Expect = 1.8 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 205 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 98 + +N P + S TAA KM +I SP+T +S R Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317 >At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative similar to SP|P161127 from Arabidopsis thaliana, SP|P93162 from Glycine max, SP|O22436 from Nicotiana tabacum; non-consensus AA donor splice site at exon 1, TG acceptor splice site at exon 2 Length = 418 Score = 27.5 bits (58), Expect = 2.4 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +3 Query: 51 KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 215 K+ EL+ + + + +VD + T +++ I KA V+ + PGL AKA GI Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215 >At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical to plastidic lipoamide dehydrogenase from Arabidopsis thaliana [gi:7159282] Length = 570 Score = 27.1 bits (57), Expect = 3.1 Identities = 15/78 (19%), Positives = 34/78 (43%) Frame = +3 Query: 21 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 200 G +++ K +++ ++ ++ V + V G+ + T A ++ P W + Sbjct: 203 GPQKVKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPEWIAIVGS 262 Query: 201 ALEGINVRDLITNIGSGV 254 G+ D+ T +GS V Sbjct: 263 GYIGLEFSDVYTALGSEV 280 >At1g29120.2 68414.m03565 expressed protein Length = 455 Score = 26.6 bits (56), Expect = 4.1 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +3 Query: 33 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 176 LA S + S+ +A +YSA + DVAV+ S +L+ +EP Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223 >At1g29120.1 68414.m03564 expressed protein Length = 455 Score = 26.6 bits (56), Expect = 4.1 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +3 Query: 33 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 176 LA S + S+ +A +YSA + DVAV+ S +L+ +EP Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223 >At1g09575.1 68414.m01074 expressed protein contains Pfam domain, PF04678: Protein of unknown function, DUF607 Length = 292 Score = 26.2 bits (55), Expect = 5.4 Identities = 14/50 (28%), Positives = 23/50 (46%) Frame = -2 Query: 242 DVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDE 93 DV T ++A QG G P ++++R D G L + +H D+ Sbjct: 78 DVVSYSTLLEASQGMGIARSPDEAHVFARVLDDAGVVLIFRDKVYLHPDK 127 >At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein contains Pfam profiles: PF02538 hydantoinase B/oxoprolinase, PF01968 hydantoinase/oxoprolinase, PF05378 hydantoinase/oxoprolinase N-terminal region Length = 1266 Score = 25.8 bits (54), Expect = 7.2 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -2 Query: 194 EQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 87 EQ +P+ L+ + R GGN L G+ ++ + E R Sbjct: 1161 EQRYPVLLHRFGLRENSGGNGLHKGGDGLVREIEFR 1196 >At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative similar to glucose-6-phosphate isomerase [Spinacia oleracea] GI:3413511; contains Pfam profile PF00342: glucose-6-phosphate isomerase Length = 613 Score = 25.8 bits (54), Expect = 7.2 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 186 GLFAKALEGINVRDLIT 236 GL AL+GINVR+++T Sbjct: 316 GLLPAALQGINVREMLT 332 >At1g32600.1 68414.m04023 F-box family protein-related contains TIGRFAM TIGR01640 : F-box protein interaction domain; identical to hypothetical protein GB:AAF25964 GI:6714268 from [Arabidopsis thaliana] Length = 293 Score = 25.8 bits (54), Expect = 7.2 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = +3 Query: 57 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 224 VS+ EL CV + VDD++ V +I + K A D +P W + E +++R Sbjct: 186 VSRGEL-CVINHYPSVDDNLCVCRREIRSGKKIARWDSDP-WMNVAGNDDEPVDIR 239 >At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mutase family protein similar to X4 protein GI:21386798, Y4 protein GI:21386800 from [Silene dioica]; contains Pfam profiles PF00300: phosphoglycerate mutase family, PF01535: PPR repeat Length = 1053 Score = 25.4 bits (53), Expect = 9.5 Identities = 7/13 (53%), Positives = 9/13 (69%) Frame = +2 Query: 131 ENFHHLESGGCRC 169 + FHH + GGC C Sbjct: 1037 KRFHHFKDGGCSC 1049 >At2g31160.1 68415.m03804 expressed protein contains Pfam profile PF04852: Protein of unknown function (DUF640) Length = 219 Score = 25.4 bits (53), Expect = 9.5 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = -3 Query: 229 RSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 86 ++R + K RP STS+++A + F + TSS+T+++ E Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,346,192 Number of Sequences: 28952 Number of extensions: 123893 Number of successful extensions: 320 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 320 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 320 length of database: 12,070,560 effective HSP length: 72 effective length of database: 9,986,016 effective search space used: 389454624 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -