Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H09f
         (386 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96187 Cluster: Putative uncharacterized protein PFB047...    32   4.4  
UniRef50_A1D137 Cluster: Putative uncharacterized protein; n=1; ...    31   5.8  
UniRef50_A5CEI6 Cluster: Cytochrome c-type biogenesis; n=1; Orie...    31   7.7  
UniRef50_P58662 Cluster: Sensor protein rcsC; n=47; Enterobacter...    31   7.7  

>UniRef50_O96187 Cluster: Putative uncharacterized protein PFB0470w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFB0470w - Plasmodium falciparum
           (isolate 3D7)
          Length = 1346

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 268 CISNDTRKVNVFKYRLYHHF 327
           C+SN  +  NVFKY+LY H+
Sbjct: 605 CVSNILKHFNVFKYKLYFHY 624


>UniRef50_A1D137 Cluster: Putative uncharacterized protein; n=1;
           Neosartorya fischeri NRRL 181|Rep: Putative
           uncharacterized protein - Neosartorya fischeri (strain
           ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
           fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
          Length = 264

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -3

Query: 189 YFHIYY-HSYSNDCY*TVKTIAITDSSTNKVVKH---RWIFKNRR 67
           YF  YY + Y+NDC  T   I    SST +  +H   RW  KN+R
Sbjct: 138 YFSYYYRYHYANDCQ-TASEITNAPSSTTESSRHRISRWRPKNKR 181


>UniRef50_A5CEI6 Cluster: Cytochrome c-type biogenesis; n=1;
           Orientia tsutsugamushi Boryong|Rep: Cytochrome c-type
           biogenesis - Orientia tsutsugamushi (strain Boryong)
           (Rickettsia tsutsugamushi)
          Length = 628

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = -2

Query: 364 SLIYDLYVLKSKENDDIVYI*IH 296
           +L+YD+YV+ SK +DD+VY  I+
Sbjct: 563 TLLYDIYVVLSKVDDDVVYAKIY 585


>UniRef50_P58662 Cluster: Sensor protein rcsC; n=47;
           Enterobacteriaceae|Rep: Sensor protein rcsC - Salmonella
           typhimurium
          Length = 948

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 229 YNVKVYYNIKL*ICISNDTRKVNVFKYRLYHHFLSILXHKDR 354
           +N K+  +  + ICI      VN+    L H +L++L H+DR
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDR 399


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 342,622,907
Number of Sequences: 1657284
Number of extensions: 6081326
Number of successful extensions: 11727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11723
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15718494179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)