Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H09f
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0626 - 25620409-25620706,25620814-25620943,25621034-256212...    29   1.3  
08_02_0379 - 16506775-16506950,16507037-16507096,16507187-165073...    29   1.3  

>11_06_0626 -
           25620409-25620706,25620814-25620943,25621034-25621250,
           25621894-25622015,25622119-25622267,25622642-25622759,
           25622840-25623185
          Length = 459

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 171 HSYSNDCY*TVKTIAITDSSTNKVVKHRW 85
           HSYSN+ Y  V    + +SST   +K++W
Sbjct: 199 HSYSNEGYHHVSEEDVEESSTGLTLKNKW 227


>08_02_0379 -
           16506775-16506950,16507037-16507096,16507187-16507375,
           16508131-16508224,16508276-16508300,16508690-16508796,
           16508903-16509021,16510520-16510658
          Length = 302

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 253 YYNKLSRYNLQHTIIMFWYHYIFSHL 176
           Y+ K + Y+L H I+  WY +I S L
Sbjct: 101 YFKKKNVYDLHHGILGIWYSHILSKL 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,619,942
Number of Sequences: 37544
Number of extensions: 145926
Number of successful extensions: 241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)