BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS301G12f (516 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 28 3.2 At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi... 27 5.7 At2g27775.2 68415.m03367 expressed protein 27 7.5 At2g27775.1 68415.m03366 expressed protein 27 7.5 At3g51940.1 68416.m05697 expressed protein 27 9.9 >At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-related similar to RNA helicase GB:AAF03534 Length = 1317 Score = 28.3 bits (60), Expect = 3.2 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +3 Query: 294 PPRAAEPVLCPSSISLPFSYAALELIPPGFSAP*DVLLQTWLKKSLKMENISTI 455 PP +L P S+ + +SY IP +L+ LKKS+ NI TI Sbjct: 856 PPELCHVILSPISVDMIYSYT---FIPSVMQRIESLLIAYNLKKSIPKVNIPTI 906 >At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing protein low similarity to SP|P28290 Sperm-specific antigen 2 (Cleavage signal-1 protein) (CS-1) Homo sapiens; contains Pfam profile PF00515: TPR Domain Length = 649 Score = 27.5 bits (58), Expect = 5.7 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = -1 Query: 390 ALRSLEGLIPEPRMRKVKISMKDTGRVPRLWVDAGVYNVQAGCSFANVRLL 238 +++ LEG E + K+K S+K R +W G+ ++AGC + + +L Sbjct: 204 SVKELEGEELEEILSKLKDSIKLDVRQAAVWNTLGLMLLKAGCLMSAISVL 254 >At2g27775.2 68415.m03367 expressed protein Length = 112 Score = 27.1 bits (57), Expect = 7.5 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -1 Query: 462 IGILLRCSPFLRTF*ATFEVRHLMALRSLEGLIPEPRMR--KVKISMKDTGRVPRL 301 IGI R + F+R+ T R+L++ R+ +P P + S + G VPRL Sbjct: 4 IGIASRSATFMRSINRTATARNLISSRARPS-VPNPNFTSPRFNTSSRIEGSVPRL 58 >At2g27775.1 68415.m03366 expressed protein Length = 100 Score = 27.1 bits (57), Expect = 7.5 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -1 Query: 462 IGILLRCSPFLRTF*ATFEVRHLMALRSLEGLIPEPRMR--KVKISMKDTGRVPRL 301 IGI R + F+R+ T R+L++ R+ +P P + S + G VPRL Sbjct: 4 IGIASRSATFMRSINRTATARNLISSRARPS-VPNPNFTSPRFNTSSRIEGSVPRL 58 >At3g51940.1 68416.m05697 expressed protein Length = 453 Score = 26.6 bits (56), Expect = 9.9 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = +1 Query: 391 HEMSYFKRGLKSP*KW---RTSQQYADDDVPVWSNR 489 H + +R +SP +W R S +DD +PVW R Sbjct: 6 HRSRHHRR--RSPERWYSGRQSSSSSDDGIPVWEKR 39 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,817,857 Number of Sequences: 28952 Number of extensions: 247080 Number of successful extensions: 532 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 517 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 532 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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