BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS301G11f (368 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492 28 2.0 06_01_0870 + 6623478-6624257 28 2.6 02_04_0239 - 21191793-21191840,21192227-21193276 28 2.6 02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123 27 3.5 07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 26 8.1 >08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492 Length = 1141 Score = 28.3 bits (60), Expect = 2.0 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = -3 Query: 201 HRNFFYDRHFLNV-RVVMVQSMHFV-RYVDPEMCDFSVTKRLWLWQRVSQAHGDRGSQDE 28 H+N F++ F++ R + S H + R + C + LW+ + +G+R S D Sbjct: 98 HKNRFFNGEFMSYFRKLGKTSWHKIARELKDSQCHLQNLRNLWVQYEIQLPNGNRVSTDV 157 Query: 27 ND 22 D Sbjct: 158 ED 159 >06_01_0870 + 6623478-6624257 Length = 259 Score = 27.9 bits (59), Expect = 2.6 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +3 Query: 57 PG*PFARARA-VWSRKSHTFQDPRTLRSAYSAPSPHARSES 176 P P ARA A W+R H P + +A AP+P R+E+ Sbjct: 109 PSSPRARAAARFWARFFHGEVSPLSRAAAVLAPTPEERAEA 149 >02_04_0239 - 21191793-21191840,21192227-21193276 Length = 365 Score = 27.9 bits (59), Expect = 2.6 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = -3 Query: 81 WLWQRVSQAHGDRGSQDENDFVALVP 4 W + AHG G D DFV LVP Sbjct: 12 WEVLSAASAHGGGGEDDGEDFVVLVP 37 >02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123 Length = 422 Score = 27.5 bits (58), Expect = 3.5 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +3 Query: 90 WSRKSHTFQDPRTLRS----AYSAPSPHARSESAYHKRS 194 W++K+ F +P L S AY +PSP + + Y RS Sbjct: 234 WAKKTVMFPNPAFLASTSSAAYDSPSPSKKQKRFYKTRS 272 >07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544, 8510652-8510761,8511337-8511391,8511447-8511631, 8512537-8512599,8513713-8513782,8514159-8514242, 8515925-8516159,8516213-8516517 Length = 554 Score = 26.2 bits (55), Expect = 8.1 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Frame = +3 Query: 30 RPGC--HGRHEP-G*PFA-RARAVWSRKSHTFQDPR--TLRSAYSAPSPHARSESAYHKR 191 RPGC HG G A +A S + TF P TL +S PSPH R+ S+ Sbjct: 452 RPGCESHGAASSVGASVAGQAPQTASTTALTFSFPASTTLSPWWSPPSPHPRATSSPSTS 511 Query: 192 SSCDQGAAYHQRSSGRE 242 C A ++ + E Sbjct: 512 PRCSPRAETARQGAAHE 528 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,233,805 Number of Sequences: 37544 Number of extensions: 197648 Number of successful extensions: 586 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 583 length of database: 14,793,348 effective HSP length: 74 effective length of database: 12,015,092 effective search space used: 576724416 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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