BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS301G05f (428 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF098992-9|AAC67451.1| 425|Caenorhabditis elegans Hypothetical ... 28 2.5 Z81136-3|CAD27610.1| 196|Caenorhabditis elegans Hypothetical pr... 28 3.3 U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 28 3.3 AF324055-1|AAK01416.1| 151|Caenorhabditis elegans Ly-6-related ... 28 3.3 AC006608-11|AAF39761.1| 360|Caenorhabditis elegans Hypothetical... 27 7.5 U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical p... 26 10.0 AF016442-9|AAB65921.1| 714|Caenorhabditis elegans Hypothetical ... 26 10.0 >AF098992-9|AAC67451.1| 425|Caenorhabditis elegans Hypothetical protein F53C3.11 protein. Length = 425 Score = 28.3 bits (60), Expect = 2.5 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -3 Query: 411 INKRNHLIYRKMGFYSFLKSTGK 343 +NKR ++Y F+ FLKS K Sbjct: 77 LNKRKFILYNSSNFFKFLKSVAK 99 >Z81136-3|CAD27610.1| 196|Caenorhabditis elegans Hypothetical protein W02B8.5 protein. Length = 196 Score = 27.9 bits (59), Expect = 3.3 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = -2 Query: 265 NCDRTTSSRCNSNDSHTRVHTIP-YTVATPRMPSQYVWGKYNGHTL---DCGLRDDRR 104 N R SS+C+ T +HT+P T+ + V G+ GH L C L RR Sbjct: 68 NRPRNFSSQCDGEMDVTNMHTVPCRTICLTIQQNLVVMGQPTGHRLYMRGCALTIARR 125 >U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein C37C3.6b protein. Length = 2167 Score = 27.9 bits (59), Expect = 3.3 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -2 Query: 310 DTILRWKVDSRLSI*NCDRTTSSRCNSNDSH 218 D ILRW+ DS S C S CN N +H Sbjct: 1742 DNILRWRFDSEKS--QCVTFMYSGCNPNANH 1770 >AF324055-1|AAK01416.1| 151|Caenorhabditis elegans Ly-6-related protein HOT-3 protein. Length = 151 Score = 27.9 bits (59), Expect = 3.3 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = -2 Query: 265 NCDRTTSSRCNSNDSHTRVHTIP-YTVATPRMPSQYVWGKYNGHTL---DCGLRDDRR 104 N R SS+C+ T +HT+P T+ + V G+ GH L C L RR Sbjct: 23 NRPRNFSSQCDGEMDVTNMHTVPCRTICLTIQQNLVVMGQPTGHRLYMRGCALTIARR 80 >AC006608-11|AAF39761.1| 360|Caenorhabditis elegans Hypothetical protein C15F1.1 protein. Length = 360 Score = 26.6 bits (56), Expect = 7.5 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -2 Query: 298 RWKVDSRLSI*NCDRTTSSRCNSNDSHTRVHTIPYTVATPRMPSQY-VWGKYN 143 R++ +R S+ + T N++D + VHT + + R P Y V+ K+N Sbjct: 82 RFRFSARRSLIDDVETFQRNVNTSDVISIVHTFQFIIIFNRFPDPYSVYTKHN 134 >U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical protein F36D4.5a protein. Length = 334 Score = 26.2 bits (55), Expect = 10.0 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Frame = -3 Query: 393 LIYRKMG-FYSFLKSTGKQELTPRSHIRGIQFYDGKWTRDYRFKIAIGQLHRG 238 L Y G YS + R + + YD W DY I +G H G Sbjct: 5 LFYSTFGCLYSPTSTMDVMGTARRKTVVRLNVYDMYWLNDYASNIGVGIFHSG 57 >AF016442-9|AAB65921.1| 714|Caenorhabditis elegans Hypothetical protein K12B6.8 protein. Length = 714 Score = 26.2 bits (55), Expect = 10.0 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +1 Query: 13 VLLMDKT-YPCEASSKIVFALCQKPLVQRSCCAGRHAARSLMYDHY 147 ++ DK+ CE +K + C PL+Q+S R L++ Y Sbjct: 662 IMTNDKSAIKCERCTKSIHEKCAAPLLQQSVMCPTCKQRMLLFSEY 707 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,384,878 Number of Sequences: 27780 Number of extensions: 220576 Number of successful extensions: 481 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 477 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 481 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 713998766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -