Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0158.Seq
         (458 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   122   9e-29
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   122   9e-29
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   122   9e-29
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   121   3e-28
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         115   1e-26
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          74   5e-14
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    73   7e-14
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   1.5  
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    27   6.1  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  122 bits (295), Expect = 9e-29
 Identities = 57/71 (80%), Positives = 65/71 (91%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 222 IVVNLTGRLNK 254
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 21/28 (75%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFG 337
           GVISPRFDV + +IE WT  LLPSRQFG
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFG 100



 Score = 36.3 bits (80), Expect = 0.010
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 337 FLVLTTSGGIMDHEEARXKH 396
           ++VLTTS GIMDHEEAR K+
Sbjct: 101 YIVLTTSAGIMDHEEARRKN 120


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  122 bits (295), Expect = 9e-29
 Identities = 57/71 (80%), Positives = 65/71 (91%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 222 IVVNLTGRLNK 254
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 21/28 (75%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFG 337
           GVISPRFDV + +IE WT  LLPSRQFG
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFG 100



 Score = 36.3 bits (80), Expect = 0.010
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 337 FLVLTTSGGIMDHEEARXKH 396
           ++VLTTS GIMDHEEAR K+
Sbjct: 101 YIVLTTSAGIMDHEEARRKN 120


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  122 bits (295), Expect = 9e-29
 Identities = 57/71 (80%), Positives = 65/71 (91%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 222 IVVNLTGRLNK 254
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 21/28 (75%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFG 337
           GVISPRFDV + +IE WT  LLPSRQFG
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFG 100



 Score = 36.3 bits (80), Expect = 0.010
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 337 FLVLTTSGGIMDHEEARXKH 396
           ++VLTTS GIMDHEEAR K+
Sbjct: 101 YIVLTTSAGIMDHEEARRKN 120


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  121 bits (291), Expect = 3e-28
 Identities = 56/71 (78%), Positives = 64/71 (90%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 222 IVVNLTGRLNK 254
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 21/28 (75%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFG 337
           GVISPRFDV + +IE WT  LLPSRQFG
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFG 100



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 337 FLVLTTSGGIMDHEEARXKH 396
           F+VLTTS GIMDHEEAR K+
Sbjct: 101 FIVLTTSAGIMDHEEARRKN 120


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  115 bits (277), Expect = 1e-26
 Identities = 54/70 (77%), Positives = 61/70 (87%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 222 IVVNLTGRLN 251
           IVV L GRLN
Sbjct: 67  IVVELNGRLN 76



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 19/28 (67%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFG 337
           GVISPR+D+ + +IE WT  LLPSRQFG
Sbjct: 79  GVISPRYDLGVKEIEGWTAKLLPSRQFG 106



 Score = 36.3 bits (80), Expect = 0.010
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 337 FLVLTTSGGIMDHEEARXKH 396
           ++VLTTS GIMDHEEAR K+
Sbjct: 107 YIVLTTSAGIMDHEEARKKN 126


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 33/65 (50%), Positives = 47/65 (72%)
 Frame = +3

Query: 57  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 236
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 237 TGRLN 251
            GR+N
Sbjct: 65  QGRVN 69



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 325 TTVW-FLVLTTSGGIMDHEEA 384
           T  W ++V+TT  GI+DHEEA
Sbjct: 95  TRQWGYIVITTPDGILDHEEA 115


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 32/65 (49%), Positives = 47/65 (72%)
 Frame = +3

Query: 57  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 236
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 237 TGRLN 251
            GR+N
Sbjct: 65  QGRVN 69



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 325 TTVW-FLVLTTSGGIMDHEEA 384
           T  W ++V+TT  GI+DHEEA
Sbjct: 95  TRQWGYVVITTPDGILDHEEA 115


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 120 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 227
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 265 NDTTLFSLPVRFTTILPAL*SSTI 194
           N++++FS P   TT++P L SS+I
Sbjct: 177 NNSSIFSTPPPVTTVMPTLPSSSI 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,357,924
Number of Sequences: 28952
Number of extensions: 153260
Number of successful extensions: 312
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)