SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0156.Seq
         (399 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT019672-1|AAV38478.1|  204|Homo sapiens ribosomal protein L15 p...    92   5e-19
BC071672-1|AAH71672.1|  204|Homo sapiens ribosomal protein L15 p...    92   5e-19
BC070328-1|AAH70328.1|  204|Homo sapiens ribosomal protein L15 p...    92   5e-19
BC068198-1|AAH68198.1|  204|Homo sapiens ribosomal protein L15 p...    92   5e-19
BC030575-1|AAH30575.1|  219|Homo sapiens Similar to RIKEN cDNA 2...    92   5e-19
AY347528-1|AAQ24859.1|  204|Homo sapiens ribosomal protein L15 p...    92   5e-19
AL355137-1|CAI14965.1|  204|Homo sapiens ribosomal protein L15 p...    92   5e-19
AF283772-1|AAG15591.1|  204|Homo sapiens protein ( Homo sapiens ...    92   5e-19
AF279903-1|AAG44837.1|  204|Homo sapiens 60S ribosomal protein L...    92   5e-19
AB061823-1|BAB79461.1|  204|Homo sapiens ribosomal protein L15 p...    92   5e-19
BC014837-1|AAH14837.1|  204|Homo sapiens ribosomal protein L15 p...    90   2e-18
L25899-1|AAA36583.1|  205|Homo sapiens ribosomal protein L10 pro...    81   1e-15
AB028987-1|BAA83016.2| 1315|Homo sapiens KIAA1064 protein protein.     33   0.35 
BT007415-1|AAP36083.1|  494|Homo sapiens splicing factor, argini...    31   1.1  
BC002781-1|AAH02781.1|  494|Homo sapiens splicing factor, argini...    31   1.1  
AL590729-1|CAI14326.1|  494|Homo sapiens splicing factor, argini...    31   1.1  
AL357500-1|CAH71635.1|  494|Homo sapiens splicing factor, argini...    31   1.1  
Y12065-1|CAA72789.1|  602|Homo sapiens hNop56 protein.                 29   7.5  
D13705-1|BAA02864.1|  521|Homo sapiens fatty acid omega-hydroxyl...    29   7.5  
BC104793-1|AAI04794.1|  594|Homo sapiens nucleolar protein 5A pr...    29   7.5  
BC104791-1|AAI04792.1|  594|Homo sapiens nucleolar protein 5A (5...    29   7.5  
BC018421-1|AAH18421.1|  447|Homo sapiens Unknown (protein for IM...    29   7.5  
AL049712-5|CAI22418.1|  281|Homo sapiens nucleolar protein 5A (5...    29   7.5  
AL049712-4|CAC01444.2|  594|Homo sapiens nucleolar protein 5A (5...    29   7.5  

>BT019672-1|AAV38478.1|  204|Homo sapiens ribosomal protein L15
           protein.
          Length = 204

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKFFEVILIDPFHKAIRRNP 146


>BC071672-1|AAH71672.1|  204|Homo sapiens ribosomal protein L15
           protein.
          Length = 204

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKFFEVILIDPFHKAIRRNP 146


>BC070328-1|AAH70328.1|  204|Homo sapiens ribosomal protein L15
           protein.
          Length = 204

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKFFEVILIDPFHKAIRRNP 146


>BC068198-1|AAH68198.1|  204|Homo sapiens ribosomal protein L15
           protein.
          Length = 204

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKFFEVILIDPFHKAIRRNP 146


>BC030575-1|AAH30575.1|  219|Homo sapiens Similar to RIKEN cDNA
           2510008H07 gene protein.
          Length = 219

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 164 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 219



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 134 YWVGEDSTYKFFEVILIDPFHKAIRRNP 161


>AY347528-1|AAQ24859.1|  204|Homo sapiens ribosomal protein L15
           protein.
          Length = 204

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKFFEVILIDPFHKAIRRNP 146


>AL355137-1|CAI14965.1|  204|Homo sapiens ribosomal protein L15
           pseudogene 3 protein.
          Length = 204

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKFFEVILIDPFHKAIRRNP 146


>AF283772-1|AAG15591.1|  204|Homo sapiens protein ( Homo sapiens
           clone TCBAP0781 mRNA sequence. ).
          Length = 204

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKFFEVILIDPFHKAIRRNP 146


>AF279903-1|AAG44837.1|  204|Homo sapiens 60S ribosomal protein L15
           protein.
          Length = 204

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKFFEVILIDPFHKAIRRNP 146


>AB061823-1|BAB79461.1|  204|Homo sapiens ribosomal protein L15
           protein.
          Length = 204

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKAFEVILIDPFHKAIRRNP 146


>BC014837-1|AAH14837.1|  204|Homo sapiens ribosomal protein L15
           protein.
          Length = 204

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 43/56 (76%), Positives = 44/56 (78%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           Q I   VHKHREMRGLTSAGR SRGLGKGH+   T GGSRRAAW RRNTLQL R R
Sbjct: 149 QWITKPVHKHREMRGLTSAGRKSRGLGKGHKSHHTIGGSRRAAWRRRNTLQLHRYR 204



 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK+FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKFFEVILIDPFHKAIRRNP 146


>L25899-1|AAA36583.1|  205|Homo sapiens ribosomal protein L10
           protein.
          Length = 205

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 37/49 (75%), Positives = 39/49 (79%)
 Frame = -1

Query: 258 QRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNT 112
           Q I    HKHREMRGLTSAGR SRGLGKGH++  T GGSRRAAW RRNT
Sbjct: 149 QWITKPDHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNT 197



 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDP 264
           YWV +DS+YK FEVIL+DP HKAIRR+P
Sbjct: 119 YWVGEDSTYKAFEVILIDPFHKAIRRNP 146


>AB028987-1|BAA83016.2| 1315|Homo sapiens KIAA1064 protein protein.
          Length = 1315

 Score = 33.1 bits (72), Expect = 0.35
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = -1

Query: 240 VHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSR 139
           ++++R  +  +S GR SRG G+G+R   ++GGSR
Sbjct: 236 LNQYRRAKEGSSRGRGSRGRGRGYRGRGSRGGSR 269



 Score = 28.7 bits (61), Expect = 7.5
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 219 RGLTSA-GRSSRGLGKGHRYSQTKGGSR 139
           RGL+   GR SRG GKG    + +GGSR
Sbjct: 334 RGLSRGRGRGSRGRGKGMGRGRGRGGSR 361


>BT007415-1|AAP36083.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 309 GYPRGPVTQGHSSRS*DQRIVNAVHKHREMRGLTSAGRS-SRGLGKGHRYSQTKGGSRRA 133
           G P+      H S+S  +          E RG  S GRS  + L +    S++KGGSR  
Sbjct: 284 GKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSR 343

Query: 132 AWLRRNTLQLRRKR 91
           +  R  +   R+ R
Sbjct: 344 SRSRSKSKDKRKGR 357


>BC002781-1|AAH02781.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 309 GYPRGPVTQGHSSRS*DQRIVNAVHKHREMRGLTSAGRS-SRGLGKGHRYSQTKGGSRRA 133
           G P+      H S+S  +          E RG  S GRS  + L +    S++KGGSR  
Sbjct: 284 GKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSR 343

Query: 132 AWLRRNTLQLRRKR 91
           +  R  +   R+ R
Sbjct: 344 SRSRSKSKDKRKGR 357


>AL590729-1|CAI14326.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 309 GYPRGPVTQGHSSRS*DQRIVNAVHKHREMRGLTSAGRS-SRGLGKGHRYSQTKGGSRRA 133
           G P+      H S+S  +          E RG  S GRS  + L +    S++KGGSR  
Sbjct: 284 GKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSR 343

Query: 132 AWLRRNTLQLRRKR 91
           +  R  +   R+ R
Sbjct: 344 SRSRSKSKDKRKGR 357


>AL357500-1|CAH71635.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 309 GYPRGPVTQGHSSRS*DQRIVNAVHKHREMRGLTSAGRS-SRGLGKGHRYSQTKGGSRRA 133
           G P+      H S+S  +          E RG  S GRS  + L +    S++KGGSR  
Sbjct: 284 GKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSR 343

Query: 132 AWLRRNTLQLRRKR 91
           +  R  +   R+ R
Sbjct: 344 SRSRSKSKDKRKGR 357


>Y12065-1|CAA72789.1|  602|Homo sapiens hNop56 protein.
          Length = 602

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 240 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 151
           +H H  ++GLT        LG GH YS+ K
Sbjct: 133 LHFHNLVKGLTDLSACKAQLGLGHSYSRAK 162


>D13705-1|BAA02864.1|  521|Homo sapiens fatty acid omega-hydroxylase
           protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = -1

Query: 255 RIVNAVHKHREMRGLTSAGR-SSRGLGKGHRYSQTKGGSRRAAWLRR--NTLQLRRKR 91
           R+ NA H++  +  LTSAGR + R     H++++ K    R A L++     +++RKR
Sbjct: 231 RVRNAFHQNDTIYSLTSAGRWTHRACQLSHQHTRPKVIQLRKAQLQKEGELEKIKRKR 288


>BC104793-1|AAI04794.1|  594|Homo sapiens nucleolar protein 5A
           protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 240 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 151
           +H H  ++GLT        LG GH YS+ K
Sbjct: 127 LHFHNLVKGLTDLSACKAQLGLGHSYSRAK 156


>BC104791-1|AAI04792.1|  594|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 240 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 151
           +H H  ++GLT        LG GH YS+ K
Sbjct: 127 LHFHNLVKGLTDLSACKAQLGLGHSYSRAK 156


>BC018421-1|AAH18421.1|  447|Homo sapiens Unknown (protein for
           IMAGE:4448930) protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 240 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 151
           +H H  ++GLT        LG GH YS+ K
Sbjct: 123 LHFHNLVKGLTDLSACKAQLGLGHSYSRAK 152


>AL049712-5|CAI22418.1|  281|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 240 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 151
           +H H  ++GLT        LG GH YS+ K
Sbjct: 127 LHFHNLVKGLTDLSACKAQLGLGHSYSRAK 156


>AL049712-4|CAC01444.2|  594|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 240 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 151
           +H H  ++GLT        LG GH YS+ K
Sbjct: 127 LHFHNLVKGLTDLSACKAQLGLGHSYSRAK 156


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,982,778
Number of Sequences: 237096
Number of extensions: 975058
Number of successful extensions: 2084
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2084
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -