Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0150.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0610 + 24335153-24337724,24337835-24338256 30 0.99
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 29 1.7
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 29 2.3
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 28 4.0
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 27 5.3
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431... 27 5.3
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041... 27 7.0
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 27 7.0
01_06_0390 - 28938485-28938751,28939924-28941282 27 7.0
07_01_1153 - 10842259-10842390,10843348-10845315 27 9.2
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582... 27 9.2
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 29.9 bits (64), Expect = 0.99
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 166 SLLNLMILKLTSREITSNIPESLSR 240
+L L+ LKLTS ++T NIP +L R
Sbjct: 481 NLRQLVYLKLTSNKLTGNIPNALDR 505
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 93 VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDD 185
+W+ DDD FP F+ IP+ S +FDD
Sbjct: 1072 IWDSDDD-FPNEEKHFRTQIIPKDLSQDFDD 1101
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 99 EDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQYTG 227
E + D P +T PE PE S++ + K + A DNE+Y G
Sbjct: 413 EVEQDQMPPVQETLHNPE-PE--SIDIEPPKENTADDNERYVG 452
>11_06_0109 +
20202629-20205452,20206354-20206578,20207208-20208091,
20208692-20208814
Length = 1351
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 169 LLNLMILKLTSREITSNIPESLSRVTVPHH 258
L L IL+L+ + +IP S++++T HH
Sbjct: 725 LTELQILRLSHNSFSGDIPRSITKLTNLHH 754
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 93 VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQY 221
VW+DD L G+ + K+ I S + I+ + NE+Y
Sbjct: 245 VWQDDTILVIGWGTSVKIAAIRTDSSQGLNGIQRSITASNEKY 287
>01_06_0445 -
29441472-29442152,29442244-29442357,29442959-29443186,
29443284-29443586
Length = 441
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 162 SLVSLAS*TYLRIPGTNRHRPPIQSQRS 79
S +SL R+ G H+PP+Q QRS
Sbjct: 357 SYMSLTKSAKARLSGYGSHKPPLQRQRS 384
>02_04_0458 -
23102262-23102377,23102505-23102661,23103094-23104140,
23104357-23104500,23105389-23105457
Length = 510
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 229 SPVYCSLSPAT*VLISSNSRDFISGISGILNVSENPGN 116
+P +C PA+ V + S+ FIS + ILN + P +
Sbjct: 33 NPQFCHTQPASFVTVISDRTTFISIFAKILNSAIQPAS 70
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 166 SLLNLMILKLTSREITSNIPESLSRVT 246
+L +L+ L L++ EIT +IPES+ +T
Sbjct: 300 NLRSLIKLYLSTNEITGSIPESIGNLT 326
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 63 TLITIASAGFVWEDDDDLFP-----GFSDTFKMPEIPEIKSLE 176
T+I +A+ W D DD+F G++D +PEIPE S E
Sbjct: 192 TIIEMATGRVPWSDMDDVFSAVHRIGYTDA--VPEIPEWLSPE 232
>07_01_1153 - 10842259-10842390,10843348-10845315
Length = 699
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 257 TVNGKTVSSGGVSELTN 307
T++G T++SGG+ ELTN
Sbjct: 41 TMDGATITSGGLLELTN 57
>05_02_0030 +
5826065-5826092,5826307-5828309,5828412-5828732,
5828821-5828907,5828981-5829583,5829680-5829844,
5829941-5830235,5830320-5830534,5830621-5830926,
5831200-5831263,5831384-5831623,5831756-5831853
Length = 1474
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 245 QFLTTVNGKTVSSGGVSELTNDGKAVEEKVMEYKD 349
+ L NG+ G SEL G A E+ V +KD
Sbjct: 811 KILVMENGEITQEGTYSELLQSGTAFEQLVNAHKD 845
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,640
Number of Sequences: 37544
Number of extensions: 169668
Number of successful extensions: 508
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -