Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0150
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 154 5e-38
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87) 30 1.7
SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 29 3.0
SB_57265| Best HMM Match : HTH_8 (HMM E-Value=1.2) 28 5.3
SB_52542| Best HMM Match : DUF1279 (HMM E-Value=0.96) 28 7.0
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 7.0
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_7224| Best HMM Match : TIL (HMM E-Value=8.2) 27 9.3
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 154 bits (374), Expect = 5e-38
Identities = 68/84 (80%), Positives = 77/84 (91%)
Frame = +1
Query: 256 HCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDF 435
HCTVRG KAEEILE+GLKV+EYEL + FSATGNFGFGIQEHIDLGIKYDPSIGIYG+DF
Sbjct: 63 HCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDF 122
Query: 436 YVVLGRPGFNVAHRRRKTGKVGFP 507
+VVLGRPGFN++ R+ K G+VGFP
Sbjct: 123 FVVLGRPGFNISKRKHKQGRVGFP 146
Score = 111 bits (268), Expect = 3e-25
Identities = 54/60 (90%), Positives = 56/60 (93%)
Frame = +2
Query: 74 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 253
N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+
Sbjct: 2 NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIS 61
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 459 FQRSTQKA*DRKSGISPRLTKEDAMKWFQQK 551
F S +K + G RLTK+DAMKWFQQK
Sbjct: 131 FNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 135 VTG*LVPPRCWSNSQDNSLYFP 200
VT LVPP W+ SQD +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763
>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
Length = 770
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = -1
Query: 459 TWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGE--VVTPQFIFSDFQTPLKDF 286
+W A ++ Q + QV+ NT R + + TP + D +TP +D
Sbjct: 144 SWNAIDSLRAQKVRQMEHAQTRQQVSPGSNTHLNSRREQDPNIATPASLRGDTETPARDH 203
Query: 285 FCFSSSDCTMAAIFSLRRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPT 121
S T ++I S R + + E +G P TL + +PD+PT
Sbjct: 204 MTSQSGQSTPSSILSERFLLQSPFKDAEPETSG-SPYQRVFTLDSPTVSTPDNPT 257
>SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 359 KLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWQQSFHYDGYQKT 219
K + L R + Y+ KPL S ++ WQ+S H+ Y +T
Sbjct: 383 KFNIINLLKRDSLYNYGMKPLLYSSKVAEDSSIGWQRSGHHVNYTRT 429
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 368 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWQQSFHY 237
P P++P + L + L T+KPL RIS++L+ ++Q S+ Y
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPY 347
>SB_57265| Best HMM Match : HTH_8 (HMM E-Value=1.2)
Length = 274
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 137 DRLTRAAKVLEQLTG----QQPVFSKARYTVRSFGIRRNEKIAAIVQSEELKQKKSLRGV 304
D L R +VLE + +F K +TV + G+ KIAAIV+S RGV
Sbjct: 152 DELERENRVLENQKPLRERNKAIFKKHGFTVTAIGLAVATKIAAIVRSFGRSLSSVARGV 211
>SB_52542| Best HMM Match : DUF1279 (HMM E-Value=0.96)
Length = 179
Score = 27.9 bits (59), Expect = 7.0
Identities = 25/86 (29%), Positives = 39/86 (45%)
Frame = +2
Query: 47 EEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSF 226
+ S ++S+ R + +L I E G+R K L + + +F K +TV +
Sbjct: 34 DPNSSESSRQEARERNKERLS-EIDELERGNRELENQKPLRERI--KAIFKKYGFTVTAI 90
Query: 227 GIRRNEKIAAIVQSEELKQKKSLRGV 304
G+ KIAAIV+S RGV
Sbjct: 91 GLAVATKIAAIVKSLGKSLSSVARGV 116
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 328 RRDNFSATGNFGFGIQEHIDLGIKYD 405
++ ++SATG+F ++EHI G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 276 SSSDCTMAAIFSLRRIPKDRTVYLALENTGCCPVSCSNTL 157
+ +C + FS +P R + T CP SC NTL
Sbjct: 1689 NEGNCGLCEGFSCDSVPYSRCTIINGSPTCVCPPSCPNTL 1728
>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 134 GDRLTRAAKVLEQLTGQQPVFSKARY 211
G R TR A +QLT + VFSK Y
Sbjct: 66 GSRRTRTAFTHQQLTALEKVFSKTHY 91
>SB_7224| Best HMM Match : TIL (HMM E-Value=8.2)
Length = 147
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/69 (26%), Positives = 25/69 (36%)
Frame = -2
Query: 482 RLLCATLKPGRXXXXXXXXXXXXIEGSYLIPKSMCS*IPKPKLPVAEKLSRRNSYSLTFK 303
R C T+KP IP C K K P+++ L YS+ F+
Sbjct: 77 RCYCLTVKPCGSKISADPRICPENVADRRIPPLECDIQAKIKTPISKTLLHVRLYSIVFR 136
Query: 302 PLSRISSAL 276
P S+L
Sbjct: 137 PTKTQKSSL 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,256
Number of Sequences: 59808
Number of extensions: 403380
Number of successful extensions: 1201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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