BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30146 (752 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 103 3e-23 SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 58 1e-09 SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 29 0.71 SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 28 1.6 SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 3.8 SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 3.8 SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.0 SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 26 6.6 SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 8.8 >SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces pombe|chr 3|||Manual Length = 612 Score = 103 bits (247), Expect = 3e-23 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 3/151 (1%) Frame = +1 Query: 184 LDPSSFSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVD---VLQDIGDVVLDSSELTIE 354 LDPS+ S I + +DF+ ++L+G + + V Q + ++LD+S L I+ Sbjct: 5 LDPSTQSNYHDVSISKLDWHARIDFDQELLHGKVSFVIQSARVSQALSHIILDTSYLEIK 64 Query: 355 SIELDGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPAQ 534 ++ ++ +++D GS L I S + I Y+T+ TALQ+L+P Q Sbjct: 65 NVTINDIPTPFRVDKRRGFLGSALHIVPADEIPSSKSCILTILYSTTKDCTALQFLKPEQ 124 Query: 535 TSGKKHPYLFSQCQPIHARSILPCQDTPFVK 627 T G K PY+FS+CQ IHARS +PCQDTP VK Sbjct: 125 TIGGKFPYVFSECQAIHARSFIPCQDTPSVK 155 >SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe|chr 2|||Manual Length = 882 Score = 58.4 bits (135), Expect = 1e-09 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 4/153 (2%) Frame = +1 Query: 229 HVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELD-GAQLTYKLDDPV 405 H LSL D E G + +DVL+D + L L I + L+ G+Q + + Sbjct: 28 HYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALEWGSQTVWASE--- 84 Query: 406 PNYGS-KLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPA--QTSGKKHPYLFSQCQ 576 +YG ++ +Q P + + + +T S+ + + + + G +Q + Sbjct: 85 VSYGDERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYRSSYVDSDGNTKYLATTQME 144 Query: 577 PIHARSILPCQDTPFVKFTYDAEVTAPEEFTVL 675 P AR PC D P +K T+ ++TA E +T+L Sbjct: 145 PTSARRAFPCWDEPALKATFTIDITAKENYTIL 177 >SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1174 Score = 29.1 bits (62), Expect = 0.71 Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 29/179 (16%) Frame = +1 Query: 229 HVTLSLNVDFENKVLNGSATLDVDVLQ-DIGDVVLDSSELTIESIELDG--AQLTY---- 387 H +++++DF ++ + G + V+ + ++ +VLD + I S+ ++G + +Y Sbjct: 14 HQKVAIDIDFASQTIIGRTDITVNPIDSNLQKIVLDCYQAEIHSVYVNGDLTKFSYSDAL 73 Query: 388 ---KLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWL---------QPA 531 ++D+P + L A D I I + + P L+ L QP Sbjct: 74 KKLRIDEPNSTVNQHHQLNLQYEALMNDLGGINI-FLSKPPGDELRPLIVSIDFSVHQPI 132 Query: 532 --------QTSGKKHPYLFSQCQ--PIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLM 678 ++P++F+ P S LPC D + + T++ E+T P+ + LM Sbjct: 133 FGITFVGIDPVDHRYPHVFTNNSIIPYSTCSWLPCVDGIWERSTWEFEITLPKTLSSLM 191 >SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 897 Score = 27.9 bits (59), Expect = 1.6 Identities = 15/53 (28%), Positives = 26/53 (49%) Frame = +1 Query: 142 SRFSQVPVMGAFSPLDPSSFSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVD 300 +R + P + P PSS S P + I H T S++ D + + + +D+D Sbjct: 107 TRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLD 159 >SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein Mug36|Schizosaccharomyces pombe|chr 2|||Manual Length = 1646 Score = 26.6 bits (56), Expect = 3.8 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Frame = +1 Query: 211 EQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYK 390 E + +K++TLSL V+ E V S + VD L DS+EL I+ + G+ + Sbjct: 955 EISQLKNLTLSLVVNAEEGVF--STLITVDNLDAQVQSCADSTELLIKVLSDLGSTEDEE 1012 Query: 391 LDD-----PVPNYGSKLT 429 + D P+ +Y LT Sbjct: 1013 ISDCYLALPIEDYAKSLT 1030 >SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces pombe|chr 2|||Manual Length = 1485 Score = 26.6 bits (56), Expect = 3.8 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = -1 Query: 287 VADPFKTLFSKSTFNDKVTCFITACSGREKEDGSRGLKAPMTG 159 ++D F KS+ ++V F TA + ++ G GL++ +TG Sbjct: 439 LSDKFLKAIKKSSVVEEVLKFATAKADQQLSKGDGGLRSRITG 481 >SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosaccharomyces pombe|chr 1|||Manual Length = 1033 Score = 26.2 bits (55), Expect = 5.0 Identities = 16/66 (24%), Positives = 30/66 (45%) Frame = +1 Query: 223 IKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDP 402 +K + S ++ V NG +D +D + ++ S E + I LD + ++ P Sbjct: 28 LKVLNKSFRSSRQSSVSNGHGLYSLD--RDETESLMSSHEASNAGISLDSSFRVIQVGQP 85 Query: 403 VPNYGS 420 P YG+ Sbjct: 86 EPQYGN 91 >SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces pombe|chr 1|||Manual Length = 475 Score = 25.8 bits (54), Expect = 6.6 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +2 Query: 413 MAPN*LYNCRNEPQVVIS*KLKLSTQRPRPRLRYNGYSQLK 535 ++ N Y RN + ++ + ++ P+ RLR+NG+S L+ Sbjct: 164 LSGNVSYGTRNRSTMSVNFETPVNAD-PKTRLRFNGHSNLR 203 >SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1462 Score = 25.4 bits (53), Expect = 8.8 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -2 Query: 265 CFQNPRSTIKSRVLLQLVQAAKRK 194 C+ +P +T K V L+++ KRK Sbjct: 526 CYNDPNNTFKDDVAKTLIESKKRK 549 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,752,626 Number of Sequences: 5004 Number of extensions: 52288 Number of successful extensions: 158 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 156 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 359287726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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