BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30142 (695 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF045642-4|AAK67210.1| 226|Caenorhabditis elegans Vacuolar h at... 204 4e-53 AL590343-1|CAC35865.1| 387|Caenorhabditis elegans Hypothetical ... 28 7.3 AL032622-1|CAA21497.1| 387|Caenorhabditis elegans Y66A7A.1 prot... 28 7.3 Z67755-4|CAA91757.1| 336|Caenorhabditis elegans Hypothetical pr... 27 9.7 >AF045642-4|AAK67210.1| 226|Caenorhabditis elegans Vacuolar h atpase protein 8 protein. Length = 226 Score = 204 bits (499), Expect = 4e-53 Identities = 107/223 (47%), Positives = 136/223 (60%) Frame = +2 Query: 2 SDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXX 181 SD DVQKQ++HMMAFIEQ FNIEKGRLVQQQR KIM Sbjct: 4 SDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEKQ 63 Query: 182 XXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYPELLVTLIVQA 361 IQ+SN LN RL+ LK REDH+ VLDEAR L+ + D YP +L L++Q Sbjct: 64 VELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQG 123 Query: 362 LFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTCGGIEL 541 L QL+E V +R R+ D LVE LL + + + + +D +NFL ++ GG+EL Sbjct: 124 LLQLLEKEVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQNFLPSESAGGVEL 183 Query: 542 VAARGRIKISNTLESRLELIAQQLLPEIRNALFGRNPNRKFTD 670 A G+IK+S+TLESRLELIA Q++P++R ALFG NPNR F D Sbjct: 184 SARAGKIKVSSTLESRLELIANQIVPQVRTALFGPNPNRSFFD 226 >AL590343-1|CAC35865.1| 387|Caenorhabditis elegans Hypothetical protein Y66A7A.1 protein. Length = 387 Score = 27.9 bits (59), Expect = 7.3 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -2 Query: 367 EESLHNKCDQQLWVQFGVLWHFSQALASFVKYITYVIFTNFQYLQTSL 224 + S+ N W Q L + L++FVK++TY + + +TSL Sbjct: 267 DASIQNIVCMDQWTQATTLICGAHILSTFVKHLTYFKLMDVNFCKTSL 314 >AL032622-1|CAA21497.1| 387|Caenorhabditis elegans Y66A7A.1 protein. Length = 387 Score = 27.9 bits (59), Expect = 7.3 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -2 Query: 367 EESLHNKCDQQLWVQFGVLWHFSQALASFVKYITYVIFTNFQYLQTSL 224 + S+ N W Q L + L++FVK++TY + + +TSL Sbjct: 267 DASIQNIVCMDQWTQATTLICGAHILSTFVKHLTYFKLMDVNFCKTSL 314 >Z67755-4|CAA91757.1| 336|Caenorhabditis elegans Hypothetical protein F54F7.4 protein. Length = 336 Score = 27.5 bits (58), Expect = 9.7 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -3 Query: 558 RPLAATSSIPPQVSGDKKFSVSTFNTTSFLILFL*SVWAF 439 RP++ S P + D+ F ++TF T +I+FL ++ F Sbjct: 101 RPVSVNSRRKPSSTLDELFDLNTFFTCYVIIIFLSLIFLF 140 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,503,655 Number of Sequences: 27780 Number of extensions: 296433 Number of successful extensions: 951 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 927 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 950 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1602927856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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