Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c07r
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0116 - 907995-908813,909002-909286 36 0.044
07_01_0999 + 8426276-8426447,8426801-8426961 31 1.3
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 30 2.2
01_06_0954 - 33322951-33323606,33324213-33325014 30 2.2
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 29 2.9
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 29 3.8
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242... 29 3.8
12_02_0534 - 20103908-20105897,20106314-20107116 29 3.8
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880... 29 3.8
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 29 3.8
01_01_0707 - 5453933-5454619 29 3.8
12_02_0720 - 22510996-22512949,22513752-22514533 29 5.1
10_08_0618 + 19307658-19308584,19308690-19309082 28 6.7
01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175 28 8.8
>06_01_0116 - 907995-908813,909002-909286
Length = 367
Score = 35.5 bits (78), Expect = 0.044
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 497 LKSVIFHPRRHPHQPPLAVHEPAATITIASRVEPWGATFSADHIQRV 637
L S++ H HQPP+ PAA + V P AT S +Q+V
Sbjct: 50 LASLLLSRHHHHHQPPVLAANPAADVAAGEAVPPATATASRRFLQKV 96
>07_01_0999 + 8426276-8426447,8426801-8426961
Length = 110
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 616 AKGRPPRFDSACNGDSGSGLVDGEGRL--VGVASWVENDAFECRNG 485
AKGR R D G+ G G DGEG + +G + ND EC G
Sbjct: 57 AKGREVRVDETRIGNGGGGTYDGEGVVGCIGDSIGGTND-IECEGG 101
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +2
Query: 401 VGCVKNLNLGDLSDPVPRSGDPGEDDKVSVAALKSVIFHPRRHPHQPPLAVHEPAATITI 580
+G ++ + +LSDP S + G S A V FH HP P E I
Sbjct: 80 LGIIRKVRSLELSDPRTPSPNGGGGSSSSSTATARVPFHLPIHPPPPEREEEEEKKGI-- 137
Query: 581 ASRVEPWGATFSADHIQRVVL 643
R PW A + D +VVL
Sbjct: 138 -RRAVPWAA--ARDEETKVVL 155
>01_06_0954 - 33322951-33323606,33324213-33325014
Length = 485
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 428 GDLSDPVPRSGDPGEDDKVSVAALKSVIFHPRRHPHQPP 544
G LS V + P S+A L+ VI +RHP +PP
Sbjct: 68 GHLSAIVTKRAAPRSGCSRSIANLRDVIHGSKRHPERPP 106
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 609 PLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 734
PL++I SR L+C + T D + +S I C +P
Sbjct: 332 PLSEIHSRRLFCQRIFSTDEDGCPDILQEVSTDILKKCGGIP 373
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 606 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 734
+PL+ SR+L+C + ++ DC + + ++ +I C VP
Sbjct: 236 KPLSDDDSRQLFCKRIFDSNDDC-PADLCGVTEKILKKCGGVP 277
>12_02_0722 -
22521909-22521932,22522291-22522419,22522976-22524242,
22524659-22525461
Length = 740
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 606 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 734
+PL+ SR+L+C + ++ DC + + ++ +I C VP
Sbjct: 319 KPLSDDDSRQLFCKRIFDSNDDC-PADLCGVTEKILKKCGGVP 360
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 606 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 734
+PL+ SR+L+C + ++ DC + + ++ +I C VP
Sbjct: 319 KPLSDDDSRQLFCKRIFDSNDDC-PADLCGVTEKILKKCGGVP 360
>09_04_0324 -
16686872-16687074,16687479-16687521,16687735-16688068,
16688190-16688854
Length = 414
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 721 HGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKG 608
H GV+ + MEL ++D ++L +++S +CA+G
Sbjct: 188 HEGVVARSYSVMELVLEADSNKAQLWEFSSASGVCAEG 225
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 419 LNLGDLSDPVPRSGDPGEDD---KVSVAALKSVIFHPRRHPHQPPLA 550
++LG + D V + +D V+ AL + ++ RHPH PPLA
Sbjct: 1751 MDLGTIRDKVRKMEYKNREDFRHDVAQIALNAHTYNLNRHPHIPPLA 1797
>01_01_0707 - 5453933-5454619
Length = 228
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 419 LNLGDLSDPVPRSGDPGEDDKVSVAALKSVIFHPRRHPHQPPLAVHEPAA 568
LN DL+ +PR D + AAL +V+ H +HP PAA
Sbjct: 99 LNFPDLAPALPRPASLAPRDVQAAAALAAVMHH-HKHPSSSTSTSSPPAA 147
>12_02_0720 - 22510996-22512949,22513752-22514533
Length = 911
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 606 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 734
+PL+ SR+L+C + ++ DC + ++ +I C VP
Sbjct: 312 KPLSNDDSRQLFCKRIFDSNDDC-PGDLCGVTEKILKKCGGVP 353
>10_08_0618 + 19307658-19308584,19308690-19309082
Length = 439
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 470 EDDKVSVAALKSVIFHP-RRHPHQPPLAVHEPAATITIASRVEPWGAT 610
EDD + LK+VI R+HP + H+ A I + + P GAT
Sbjct: 327 EDDTQKMPYLKAVILEGLRKHPPGHFVLAHKAAEDIEVGGYLIPKGAT 374
>01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175
Length = 418
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +2
Query: 449 PRSGDPGEDD---KVSVAALKSVIFHPRRHPHQPPLAVHEPAATITIASRVEPW 601
PR+GD G D ++ + V P R PH PP+ + + I +R+ P+
Sbjct: 274 PRTGDRGFRDAFHRLRDLRMLRVRNRPDRIPHYPPVGYADVGVELLIDTRLSPF 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424,395
Number of Sequences: 37544
Number of extensions: 297403
Number of successful extensions: 997
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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