Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c01r
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces ...   102   6e-23
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.88 
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    26   4.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   6.2  

>SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score =  102 bits (244), Expect = 6e-23
 Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
 Frame = -3

Query: 616 LISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFKRFV-KRXXXXXIL 440
           L+SVIGD+DT  G LL G G++N+N   NF ++ + T   +I E F  +  KR     +L
Sbjct: 11  LVSVIGDDDTVTGMLLAGTGQVNENGDKNFFIITQKTTDEQIAEAFDDYTTKRKDIAIVL 70

Query: 439 INQNIAELIRHVIDAHSAPVPSVLEIPSKDHPYDASKDSILRRAK 305
           INQ  AE IR  I+ H    P+VLEIPSKD PYD  KDSILRR +
Sbjct: 71  INQFAAERIRDRIENHVQAFPAVLEIPSKDDPYDPEKDSILRRVR 115


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 498 VKSRNVSSVLLNAMTLTSFSSIRTLLN*SDM*LMRTLH 385
           +  RN SS LLN+   +SF+S+  L++     L RTL+
Sbjct: 803 LSERNASSNLLNSSLFSSFNSVNPLISLEPNPLNRTLN 840


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 181 SNIYQKFSVCNCLIFFISSI-FNTFQKTNVIFN 86
           SN+Y  F +C CL+ F + I     ++T   FN
Sbjct: 131 SNVYSIFQLCGCLLMFNNIISIRPSERTEPEFN 163


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +2

Query: 323 GVLAGIIWVVF*WDFKNRRY 382
           G +AG++WV++ + F+ R++
Sbjct: 279 GAVAGLVWVIYDYIFRTRKW 298


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 552 ISPMPPSKNPTQVSSSPITLINFPLT 629
           ++P+ P   PT+   +P+TL   P+T
Sbjct: 45  VNPIRPVYTPTRTEITPVTLSPIPIT 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,257
Number of Sequences: 5004
Number of extensions: 63246
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)