Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c01r
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32378| Best HMM Match : DUF591 (HMM E-Value=1.6) 31 0.94
SB_44116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8) 29 2.9
SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_16618| Best HMM Match : UcrQ (HMM E-Value=7.2) 29 2.9
SB_13012| Best HMM Match : TrbC (HMM E-Value=1.4) 29 2.9
SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64) 29 2.9
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1) 29 5.0
SB_21888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_17284| Best HMM Match : IncA (HMM E-Value=0.24) 29 5.0
SB_15041| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 29 5.0
SB_33959| Best HMM Match : Herpes_US9 (HMM E-Value=2) 29 5.0
SB_30288| Best HMM Match : P19Arf_N (HMM E-Value=6.8) 29 5.0
SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065) 29 5.0
SB_18435| Best HMM Match : Beta_elim_lyase (HMM E-Value=7.1) 29 5.0
SB_59724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_50799| Best HMM Match : I-set (HMM E-Value=0) 28 6.6
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25) 28 6.6
SB_58746| Best HMM Match : RA (HMM E-Value=0.85) 28 6.6
SB_52224| Best HMM Match : DUF1484 (HMM E-Value=5.6) 28 6.6
SB_30286| Best HMM Match : DUF321 (HMM E-Value=1.2) 28 8.8
SB_52805| Best HMM Match : Herpes_BFRF1 (HMM E-Value=2.6) 28 8.8
>SB_32378| Best HMM Match : DUF591 (HMM E-Value=1.6)
Length = 457
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH ++ KS Q P R P +V LR CS +WY
Sbjct: 175 MAVLH--IVLTKSKQTLFFERPIRRPRFVALRQCSLFNSWY 213
>SB_44116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 381 YLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
+++ K Q P R P +V LR CS +WY
Sbjct: 5 HIVLTKGEQTLFFERPIRCPRFVALRQCSLFNSWY 39
>SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)
Length = 672
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 381 YLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
+++ K Q P R P +V LR CS +WY
Sbjct: 5 HIVLTKGEQTLFFERPIRRPRFVALRQCSLFNSWY 39
>SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 381 YLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
+++ K Q P R P +V LR CS +WY
Sbjct: 5 HIVLTKGEQTLFFERPIRRPRFVALRQCSLFNSWY 39
>SB_16618| Best HMM Match : UcrQ (HMM E-Value=7.2)
Length = 149
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWYANANMLHVFDV 244
M LH L K Q P R P +V LR CS +WY H+ ++
Sbjct: 1 MVVLHTVLT--KGEQTLYFERPIRRPRFVALRQCSLFNSWYNLEREHHITNI 50
>SB_13012| Best HMM Match : TrbC (HMM E-Value=1.4)
Length = 367
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 381 YLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
+++ K Q P R P +V LR CS +WY
Sbjct: 5 HIVLTKGEQTLFFERPIRCPRFVALRQCSLFNSWY 39
>SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64)
Length = 361
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 51 MAVLHTVLT--KGEQTLFFERPIRRPRFVALRQCSLFNSWY 89
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 439 INQNIAELIRHVIDAHSAPVPSVLEIPSKDHPYDASKDSILRRAKGMF 296
+ I E +R I PVP+V + YD + SI+ G+F
Sbjct: 2069 VEGRIGEDVRFEIQVEGTPVPAVTFHRESEQIYDGGRYSIVEEENGLF 2116
>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
Length = 908
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 765 MVVLHTVLT--KGEQTLYFERPIRRPRFVALRQCSLFNSWY 803
>SB_21888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 1 MVVLHTVLT--KGEQTLYFERPIRRPRFVALRQCSLFNSWY 39
>SB_17284| Best HMM Match : IncA (HMM E-Value=0.24)
Length = 416
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 1 MVVLHTVLT--KGEQTLFFERPIRRPRFVALRQCSLFNSWY 39
>SB_15041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 1 MVVLHTVLT--KGEQTLFFERPIRRPRFVALRQCSLFNSWY 39
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 339 MPARTPFYVVLRACSTQTTWY 277
+P R+P +V LR CS +WY
Sbjct: 264 LPIRSPRFVALRQCSLFNSWY 284
>SB_33959| Best HMM Match : Herpes_US9 (HMM E-Value=2)
Length = 363
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 1 MVVLHTVLT--KGEQTLFFERPIRRPRFVALRQCSLFNSWY 39
>SB_30288| Best HMM Match : P19Arf_N (HMM E-Value=6.8)
Length = 256
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 126 MVVLHTVLT--KGEQTLFFERPIRRPRFVALRQCSLFNSWY 164
>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
Length = 1275
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 769 MVVLHTVLT--KGEQTLFFERPIRRPRFVALRQCSLFNSWY 807
>SB_18435| Best HMM Match : Beta_elim_lyase (HMM E-Value=7.1)
Length = 275
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 1 MVVLHTVLT--KGEQTLFFERPIRCPRFVALRQCSPFNSWY 39
>SB_59724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 381 YLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
Y + K + P R P +V LR CS +WY
Sbjct: 5 YTVLTKGERTLFFDRPIRRPRFVALRQCSLFNSWY 39
>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
Length = 1195
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 230 PIRQRTSKTCNILALAYQVVWVEHALSTT*NGVL 331
P R CNI A A+ V W++ A+S NG+L
Sbjct: 1113 PSAPRNVSICNITAHAFTVTWLDPAIS---NGIL 1143
>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 381 YLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
+++ K QK P R +V LR CS +WY
Sbjct: 5 HIVLTKGGQKLFFEQPIRRSRFVALRQCSLFNSWY 39
>SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)
Length = 1702
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 366 KSHQKTTHMMPARTPFYVVLRACSTQTTWYANANMLHVFDV 244
+S +++T R F VVLR S+Q ++N N+ H F V
Sbjct: 1658 RSRRESTGDGSFRANFTVVLREISSQPLAFSNVNISHQFGV 1698
>SB_58746| Best HMM Match : RA (HMM E-Value=0.85)
Length = 820
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 363 SHQKTTHMMPARTPFYVVLRACSTQTTWY 277
S Q P R P +V LR CS +WY
Sbjct: 545 SEQTLYFKQPIRRPRFVALRQCSLFNSWY 573
>SB_52224| Best HMM Match : DUF1484 (HMM E-Value=5.6)
Length = 128
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 399 MRTLHQYLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
M LH L K Q P R P +V LR CS +WY
Sbjct: 1 MVVLHTVLT--KGKQTLFFERPIRRPRFVALRQCSLFNSWY 39
>SB_30286| Best HMM Match : DUF321 (HMM E-Value=1.2)
Length = 237
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 381 YLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTW 280
+++ KS Q P R P +V LR CS +W
Sbjct: 5 HIVLTKSKQTLFFERPIRRPRFVALRQCSLFNSW 38
>SB_52805| Best HMM Match : Herpes_BFRF1 (HMM E-Value=2.6)
Length = 309
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 381 YLLFLKSHQKTTHMMPARTPFYVVLRACSTQTTWY 277
+++ K Q P R P V LR CS +WY
Sbjct: 5 HIVLTKGEQTLFFKRPIRRPRCVALRQCSLFNSWY 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,174,833
Number of Sequences: 59808
Number of extensions: 435100
Number of successful extensions: 1025
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -