Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E13
         (938 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)                      82   7e-16
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)                     80   3e-15
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)                     80   3e-15
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   3e-15
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)                     80   3e-15
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   5e-15
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   5e-15
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)                      79   7e-15
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   4e-14
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)                     33   0.44 
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.44 
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)                     33   0.44 
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)                     33   0.44 
SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 1036

 Score = 81.8 bits (193), Expect = 7e-16
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = +1

Query: 151 LKSKCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           L+ +C+S    HVGQAGVQIGNACWELYCLEHGIQPDGQMP+DK
Sbjct: 64  LQRECISV---HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 104



 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 35/47 (74%), Positives = 40/47 (85%)
 Frame = +1

Query: 142 RKKLKSKCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           R + + +C+S    HVGQAGVQIGNACWELYCLEHGIQPDGQMP+DK
Sbjct: 509 RVEYQRECISI---HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 552



 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQIGNACWELYCLEHGIQPDGQMP+DK
Sbjct: 588 ECISI---HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 625


>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQIGNACWELYCLEHGIQPDGQMP+DK
Sbjct: 3   ECISV---HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 40


>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 536

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQIGNACWELYCLEHGIQPDGQMP+DK
Sbjct: 3   ECISI---HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 40


>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 380

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQIGNACWELYCLEHGIQPDGQMP+DK
Sbjct: 2   ECISI---HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 39


>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1231

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQIGNACWELYCLEHGIQPDGQMP+DK
Sbjct: 374 ECISI---HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 411



 Score = 79.0 bits (186), Expect = 5e-15
 Identities = 33/41 (80%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQ+GNACWELYCLEHGIQPDGQMP+DK
Sbjct: 807 ECISV---HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDK 844


>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 885

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQIGNACWELYCLEHGIQPDGQMP+DK
Sbjct: 3   ECISI---HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 40



 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQIGNACWELYCLEHGIQPDGQMP+DK
Sbjct: 436 ECISI---HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK 473


>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 79.0 bits (186), Expect = 5e-15
 Identities = 33/41 (80%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQ+GNACWELYCLEHGIQPDGQMP+DK
Sbjct: 3   ECISV---HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDK 40


>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 79.0 bits (186), Expect = 5e-15
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +CVS    HVGQAGVQ+GNACWELYCLEHGIQPDGQMP+DK
Sbjct: 421 ECVSI---HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDK 458



 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = +1

Query: 208 IGNACWELYCLEHGIQPDGQMPTDK 282
           +GNACWELYCLEHGIQPDGQMP+DK
Sbjct: 1   MGNACWELYCLEHGIQPDGQMPSDK 25


>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 451

 Score = 78.6 bits (185), Expect = 7e-15
 Identities = 33/41 (80%), Positives = 37/41 (90%)
 Frame = +1

Query: 160 KCVSASLXHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 282
           +C+S    HVGQAGVQ+GNACWELYCLEHGIQPDGQMP+DK
Sbjct: 3   ECISI---HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDK 40


>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +1

Query: 184 HVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
           HVGQAGVQIGNACWELYCLEHGIQPDG MP+D++
Sbjct: 203 HVGQAGVQIGNACWELYCLEHGIQPDGHMPSDQS 236


>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
           GQ G QIG   WE+   EHGI P G    D +
Sbjct: 10  GQCGNQIGAKFWEVISDEHGIDPTGTYHGDSD 41


>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
           GQ G QIG   WE+   EHGI P G    D +
Sbjct: 10  GQCGNQIGAKFWEVISDEHGIDPTGTYHGDSD 41


>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
           GQ G QIG   WE+   EHGI P G    D +
Sbjct: 10  GQCGNQIGAKFWEVISDEHGIDPTGTYHGDSD 41


>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 458

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 190 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKN 285
           GQ G QIG   WE+   EHGI P G    D +
Sbjct: 223 GQCGNQIGAKFWEVISDEHGIDPTGTYHGDSD 254


>SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 223 WELYCLEHGIQPDGQ 267
           WE+   EHGI PDGQ
Sbjct: 2   WEVIAEEHGIDPDGQ 16


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,821,547
Number of Sequences: 59808
Number of extensions: 137788
Number of successful extensions: 276
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2740956230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)