Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E11
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               81   9e-16
SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)              30   2.9  
SB_45042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)                    29   5.0  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 81.4 bits (192), Expect = 9e-16
 Identities = 41/115 (35%), Positives = 67/115 (58%)
 Frame = +2

Query: 425 RTEKEALSIRKLNVKELITRLNHFNTNTRKDALDGLTELISAHPEILEKDLGLIIHGVSP 604
           +TE    ++RK  +K+L+++L+H+N+N R++AL GL  L   H  IL + LG ++  ++ 
Sbjct: 50  KTESGPTNVRKQGLKDLLSQLSHYNSNIRQEALLGLRSLFQQHEGILHEHLGTVVEKIAE 109

Query: 605 MILNVEKIVXHESLKVLHLILSNLSVEKIDPFFDVMSTFLRSAMTHINSRIXEDS 769
            + + E  V H  L +L  IL  +  E+I PF  ++S  L  AMTHI   I  +S
Sbjct: 110 KVTDTEASVRHSLLLLLRHILPLIPPERIAPFLPLVSAHLSCAMTHIIEDIQLES 164


>SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)
          Length = 643

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 413 QLRKRTEKEALSIRKLNVKELITRLNHFNTNTRKDALDGLTEL 541
           QLRK  + E LS       +L+   ++  T TR +ALDG+ EL
Sbjct: 428 QLRKGGKFEDLSEADCRPTKLVEAYDNLYTQTRVEALDGVEEL 470


>SB_45042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 413 QLRKRTEKEALSIRKLNVKELITRLNHFNTNTRKDALDGLTELISAH 553
           Q  + TE +  ++     KE++  ++     T++D +D LT+++SAH
Sbjct: 339 QPTQNTEAQTTTVLNRAKKEILRIIDLMIEKTQQDVVDLLTDMVSAH 385


>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
          Length = 912

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/88 (21%), Positives = 43/88 (48%)
 Frame = +2

Query: 422 KRTEKEALSIRKLNVKELITRLNHFNTNTRKDALDGLTELISAHPEILEKDLGLIIHGVS 601
           K  EK+ALS  + ++ + +TR +          LD L + ++   +++EKD    +  + 
Sbjct: 297 KLMEKDALSDLE-SLLQSVTRESKLMEKDALSDLDSLLQSVTRESKLMEKDALCDLDSLL 355

Query: 602 PMILNVEKIVXHESLKVLHLILSNLSVE 685
             +    K++  ++L  L  +L +++ E
Sbjct: 356 QSVTRESKLMEKDALSYLESLLQSVTRE 383


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 542 ISAHPEILEKDLGLIIHGVSPMILNVEKIVXHE-SLKVLHLILSNLSVEKI 691
           IS+ PE+ ++ + + + G+  ++  ++ I+ HE   + + L+L  L  E I
Sbjct: 573 ISSAPEVFQRTMSMTLEGLEGVVCQMDDILIHEVQDECVRLVLERLLKEGI 623


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,896,633
Number of Sequences: 59808
Number of extensions: 330087
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)