Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E05
         (895 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               86   4e-17
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   8.9  
SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 38/44 (86%), Positives = 41/44 (93%)
 Frame = +3

Query: 180 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT 311
           MSIGVPIK+LHEAEGHV+T ET  GEVYRGKLIEAEDNMNCQM+
Sbjct: 1   MSIGVPIKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMS 44



 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 43/61 (70%), Positives = 50/61 (81%), Gaps = 5/61 (8%)
 Frame = +1

Query: 313 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPT-----AGRGKSAI 477
           ++TVT RDGRV+QLE V++RGSKIRFLILPDMLKNAPMFK+   K +     AGRGKSAI
Sbjct: 45  NITVTARDGRVSQLEQVFVRGSKIRFLILPDMLKNAPMFKKMTQKGSSGTGAAGRGKSAI 104

Query: 478 L 480
           L
Sbjct: 105 L 105


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 458 DEGRVRYCEPKLLVEDEQVEEVGATVEAGKVGQDHLDASV 577
           D  R+ + E +L++  + VEE   T+   KVG+D L  S+
Sbjct: 213 DLKRIDHLEHELMISTKTVEEHVITINEMKVGKDQLQDSL 252


>SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 555 RTISTLALRYFLDSLSCTCLIFQIVKGII 641
           R+++TL +R   DSL C C+    +KGI+
Sbjct: 597 RSLNTLEIRQSKDSLYCACVDRADIKGIL 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,139,482
Number of Sequences: 59808
Number of extensions: 490117
Number of successful extensions: 1013
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)