Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0129
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)                    29   5.2  
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)                 28   9.1  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 669 PXSVFVSNTPPPLPWAVTGASY 734
           P SVF    P  +PW  TGA Y
Sbjct: 846 PVSVFACKDPTQIPWGETGADY 867


>SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)
          Length = 117

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 146 HADHGVLIHAGECIILFSDNVSVEFYGNDT 235
           H D  V++H G+C+I   D  +V   G  T
Sbjct: 27  HDDQCVIVHGGQCMIAHGDRCTVSHSGRCT 56


>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
          Length = 2084

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 636 PPYSAFPDQPPPXSVFVSNTPPPLP 710
           PP  A P  PPP      N+PPPLP
Sbjct: 513 PPPPASP--PPPLPAEEDNSPPPLP 535


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,295,476
Number of Sequences: 59808
Number of extensions: 399044
Number of successful extensions: 1101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)