Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0108
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferas...    31   0.83 
At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to hi...    30   1.9  
At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein si...    29   3.4  
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    28   5.9  
At3g63330.1 68416.m07125 protein kinase family protein contains ...    28   7.7  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    28   7.7  
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF...    28   7.7  

>At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferase /
           xyloglucan alpha-(1,2)-fucosyltransferase (FUT1) (FT1)
           identical to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 558

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 141 IIADYDSAVERSKLIYTD-NKGELITNVVNNLXRNNKMNAWSTPTSSG 281
           ++ + D+ VERS+ + T  +K  L+T++      N K   W  PTS+G
Sbjct: 391 LLPEVDTLVERSRHVNTPKHKAVLVTSLNAGYAENLKSMYWEYPTSTG 438


>At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to
           histidine kinase AHK3 [Arabidopsis thaliana]
           gi|13537198|dbj|BAB40775
          Length = 1036

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 156 DSAVERSKLIYTDNKGELITNVVNNLXRNNKMNAWSTPTSSGCKAPRTS 302
           D+ +E    +   + G+L    +  L + NKM  W+  +SSG K P  S
Sbjct: 30  DNGIEDKSGLLVGSVGDLEKTKMTTLKKKNKMWFWNKISSSGLKIPSFS 78


>At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein
           similar to leucine zipper protein GI:10177020 from
           [Arabidopsis thaliana] contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 599

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 137 VIVKMLRQDFVEGCAFVGVQRRREETQDNNSGLHLR 30
           + V+M+   F + C+ V   RRRE  +++ S LHLR
Sbjct: 192 IAVRMVAGGFAKECSRVYSSRRREFLEESLSRLHLR 227


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +3

Query: 33  KMKSAVVVLCLFAASLYAD-EGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGEL 209
           K K+   +LC+   +++   +      +  +++ ++++  DYD+ V+ S LI  +    +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457

Query: 210 ITNVVN 227
           +TN V+
Sbjct: 458 LTNGVD 463


>At3g63330.1 68416.m07125 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 376

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 120 EHLYNDVIIADYDSAVERSKLIYTDNKGELITNVV-----NNLXRNNKMNAWSTPTSSG 281
           E  YND+ +  +   V  SKL+YT  + E+ +          + R +K   W   T SG
Sbjct: 65  ESRYNDIWLVFHHEGVSLSKLMYTVEEAEISSEKAEEASHGQILRPSKWWTWLKTTESG 123


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
           similar to CLIP-associating protein CLASP2 (GI:13508651)
           [Rattus norvegicus]
          Length = 1439

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = +3

Query: 54  VLCLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNL 233
           +LC+    +Y   G+ F E L  H     ++ D ++ +ER +       G    +VVN +
Sbjct: 180 ILCI--EEMYMQGGSQFREELQRHHLPSYMVKDINARLERIEPQLRSTDGRSAHHVVNEV 237

Query: 234 XRNNKMNAWSTPTSSGCKAPRTSSGI 311
             ++     S+P +   KAP   + +
Sbjct: 238 KASSVNPKKSSPRA---KAPTRENSL 260


>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
           identical to alpha-glucosidase I (GI:16506680,
           GI:13398928) [Arabidopsis thaliana]
          Length = 852

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 168 ERSKLIYTDNKGELITNVVNN 230
           E+SK IYT+ +  LI NVV N
Sbjct: 790 EKSKAIYTELRSNLIRNVVRN 810


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,385,857
Number of Sequences: 28952
Number of extensions: 310599
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)