Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0151
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i...    31   1.0  
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu...    30   1.3  
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER...    29   3.1  
At1g30720.1 68414.m03755 FAD-binding domain-containing protein s...    29   4.1  
At3g52720.1 68416.m05808 carbonic anhydrase family protein low s...    27   9.4  
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    27   9.4  

>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
           identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH4 (SUVH4) GI:13517748
          Length = 624

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 597 PATLIVSNSPLGRNTCKLIFISSLIFVKNIY--PSSSGC*CRPGC 469
           PAT  V +SP+   T    +I SLI   N+    SS+GC CR  C
Sbjct: 346 PATNRVDDSPVSP-TSGFTYIKSLIIEPNVIIPKSSTGCNCRGSC 389


>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
           polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
           thaliana] (Genetics 139 (2), 921-939 (1995))
          Length = 631

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 422 DQQFLLFAGGEKEFKRHPGRH*HPLEDG*IFFTKISEEMKMSLQVLRPSGEFETIKVAGL 601
           DQQ LLF GG+ +  R  G +    E     F  I   M++ ++    SGE  T K   L
Sbjct: 431 DQQILLFRGGQLQDGRTLGDYNIRNESTLHLFFHIRHGMQIFVKTFSFSGETPTCKTITL 490

Query: 602 --GQSTTVDNL 628
               S T+DN+
Sbjct: 491 EVESSDTIDNV 501


>At5g11080.1 68418.m01294 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 352

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 348 SSPVMTRESLIKQINTQHFCANILKINNFYYSLAERK 458
           SSP +T +  +   +++H   NI+   N YYS A+++
Sbjct: 309 SSPRLTTDEELSDSDSEHEMVNIVSTLNLYYSKAKKE 345


>At1g30720.1 68414.m03755 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 423 INNFYYSLAERKNLSGIPADISIHWKTGKYFS 518
           +   YY ++E+ N+ G PA +S     G +FS
Sbjct: 151 LGELYYRISEKSNVLGFPAGLSTTLGVGGHFS 182


>At3g52720.1 68416.m05808 carbonic anhydrase family protein low
           similarity to storage protein (dioscorin) [Dioscorea
           cayenensis] GI:433463; contains Pfam profile PF00194:
           Eukaryotic-type carbonic anhydrase
          Length = 284

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 472 SRPTLASTGRRVNIFHENKRRNENE 546
           SRP     GRRV +FH+++R ++ E
Sbjct: 251 SRPCQPLNGRRVEMFHDHERVDKKE 275


>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 700 VKLYRAVVLVFIHAIISGQINN 635
           +  Y  +VLVFI A+   Q+NN
Sbjct: 37  IPFYLCIVLVFIQALFDSQVNN 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,831
Number of Sequences: 28952
Number of extensions: 243510
Number of successful extensions: 584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)