Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0113
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.051
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.089
SB_595| Best HMM Match : CH (HMM E-Value=0) 32 0.36
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 32 0.48
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 32 0.48
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 30 1.9
SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 4.4
SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -1
Query: 422 DVVAVSQAPSPESNLDSPLPVTTM 351
DVVAVSQAPSPESN +SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = +2
Query: 2 LPVVICLSQRLSHACLSASRIKAIPRMA 85
LPVVICLSQRLSHACLS S RMA
Sbjct: 134 LPVVICLSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = +2
Query: 2 LPVVICLSQRLSHACLSASRIKAIPRMA 85
LPVVICLSQRLSHACLS S RMA
Sbjct: 110 LPVVICLSQRLSHACLSISTRTVKLRMA 137
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = -1
Query: 413 AVSQAPSPESNLDSPLPVTTM 351
AVSQAPSPESN +SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2
Query: 412 PFLRLPLRNRTLIPRYP 362
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 34.3 bits (75), Expect = 0.089
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 503 EARNRNEYTLNILTRHNWRASLXXXXXXXXXXXXYTKIVTVKKLVVAF 646
+ R ++++ R +WRASL Y K+V VKKLVV F
Sbjct: 47 QTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 94
>SB_595| Best HMM Match : CH (HMM E-Value=0)
Length = 905
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +3
Query: 378 KVRFRRGSLRNGYHIQGRQQA--RKLPTPGTGG 470
+VR RG++++GY+ +QQA RK+P PG+ G
Sbjct: 328 EVRSNRGTIQSGYYFCKQQQAARRKIPKPGSIG 360
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 12 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 146
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 545 RHNWRASLXXXXXXXXXXXXYTKIVTVKKLVVAF 646
R +WRASL Y K+V VKKLVV F
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 47
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 12 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 146
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 431 PSLDVVAVSQAPSPESNLDSPLP 363
P+ DV+A Q P P S +D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 381 VRFRRGS-LRNGYHIQGRQQARKLPTPGTGGSDEK*RYGTLT 503
VR +RG+ + + +H+ + KL TGGS ++ RY T+T
Sbjct: 227 VRIKRGADVASDHHLLVARLKLKLKKNWTGGSSQRQRYNTIT 268
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 643 CNYELFNRNNFSIRYWSWNYRGCWH 569
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 330 DGSFCDYHGCHG*-RGIKVRFRRGSLRNGYHIQGRQQARKLPT 455
+G +H G R ++V FR G+L G H+ R ++PT
Sbjct: 327 EGGVVTFHAGQGRGRALRVHFRSGALPPGRHVVSRVLHPRMPT 369
>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 381 VRFRRGS-LRNGYHIQGRQQARKLPTPGTGGSDEK*RYGTLT 503
VR +RG+ + + +H+ + KL TGGS ++ RY T+T
Sbjct: 140 VRVKRGADVASDHHLLVARLKLKLKKNWTGGSSKRQRYNTIT 181
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 221 EGLACEVVNFDDLDNFCRSHGQVPATHLSNVCLIN 325
+G+ CE VN L C H T+ S+VC N
Sbjct: 513 DGITCEDVNECQLPGSCHVHATCANTNGSHVCTCN 547
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,298,872
Number of Sequences: 59808
Number of extensions: 439467
Number of successful extensions: 1048
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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