Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0103
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.3  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.3  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   4.1  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   4.1  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   4.1  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   4.1  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 299 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 430
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 299 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 430
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 100 LTR*NEHNARTSTRPGTGRIRFPSKPDT 17
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 100 LTR*NEHNARTSTRPGTGRIRFPSKPDT 17
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 100 LTR*NEHNARTSTRPGTGRIRFPSKPDT 17
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 100 LTR*NEHNARTSTRPGTGRIRFPSKPDT 17
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
           protein C25H3.8 protein.
          Length = 2148

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 83  T*RTNIDQTRHRPHPLPVQT 24
           T +++ID T H PHP+ VQT
Sbjct: 904 TLKSSIDITNHLPHPIAVQT 923


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,019
Number of Sequences: 27780
Number of extensions: 307690
Number of successful extensions: 760
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)