Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0100
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 3.7
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 6.5
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 27 8.6
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 27 8.6
>Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical
protein H39E23.3 protein.
Length = 746
Score = 32.3 bits (70), Expect = 0.30
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = -1
Query: 371 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERNTVARRYY-RPRTASAQPSK 207
APVK A + P+T S S K+ R A PP+ SA E+N A+R +P+T SA K
Sbjct: 525 APVKREADK-PKTESADSEKKAPAKREADPPKTESADSEKNAPAKREADKPKTESADSEK 583
Score = 32.3 bits (70), Expect = 0.30
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = -1
Query: 371 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERNTVARRYY-RPRTASAQPSK 207
APVK A + P+T S S K+ R A PP+ SA E+N A+R +P+T SA K
Sbjct: 645 APVKREADK-PKTESADSEKKAPAKREADPPKTESADSEKNAPAKREADKPKTESADSEK 703
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 180 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 61
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 180 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 61
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = -2
Query: 388 SLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPWPADIIDRAPLPPNRV 209
+++D S+SP + D L+ D+ + + +WNET D I+ PLP N +
Sbjct: 729 TISDTSTTSSSPSSTTA--DSTSTLSVDQFDFILDSGLSWNETRHNEDSINIVPLPTNAI 786
Query: 208 SNETMKVVVFQRRSRET 158
+ T + F+ R+ T
Sbjct: 787 T-PTERSQTFECRNVST 802
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = -2
Query: 388 SLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPWPADIIDRAPLPPNRV 209
+++D S+SP + D L+ D+ + + +WNET D I+ PLP N +
Sbjct: 729 TISDTSTTSSSPSSTTA--DSTSTLSVDQFDFILDSGLSWNETRHNEDSINIVPLPTNAI 786
Query: 208 SNETMKVVVFQRRSRET 158
+ T + F+ R+ T
Sbjct: 787 T-PTERSQTFECRNVST 802
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -3
Query: 177 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 61
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = -1
Query: 341 PRTGSRGSFKRRRAFPPRHHSARLERNTVARRYYRPRTASAQPSK**NNESSGFSATIAR 162
PR SR S +RR PPR S +R R R + S P + S S + +
Sbjct: 87 PRRRSR-SPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPS-PK 144
Query: 161 NDLPLMLHLSCLLTMP 114
DL L ++S + P
Sbjct: 145 RDLQLRANISVSYSSP 160
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
factor) relatedprotein 8 protein.
Length = 2329
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/70 (21%), Positives = 36/70 (51%)
Frame = -2
Query: 445 FAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWN 266
+ P+E+ L L++GH+ +D+ + G V +G+ + +++ + L+ +
Sbjct: 1309 YTPKEIGGLGMLSMGHVLIPQSDLRWMQQTEAGGVTH-FRSGMSHDEDQL--IPNLYRYI 1365
Query: 265 ETPWPADIID 236
+ PW A+ +D
Sbjct: 1366 Q-PWEAEFVD 1374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,204,907
Number of Sequences: 27780
Number of extensions: 332252
Number of successful extensions: 1014
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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