Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0095
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   6.7  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   6.7  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   8.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.9  

>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 627 LCVLNIWIKPAFAFCSTR 680
           LCV ++WIK A AF   R
Sbjct: 414 LCVTDVWIKKATAFSKRR 431


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 536 WQPSVHSDVVFDPSMS 489
           W P  H DVV DP +S
Sbjct: 187 WDPRTHVDVVIDPFLS 202


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 539 LWQPSVHSDVVFDPSMSALPI 477
           LW+  +HS VVFD S    P+
Sbjct: 488 LWKSDLHSSVVFDESAVQHPL 508


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 520 IATLFLILRCRLFLSLRSKIRQALD 446
           IATLF +L CRL  S+R  I +AL+
Sbjct: 617 IATLFELLECRLPDSVRICIVRALE 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,533
Number of Sequences: 5004
Number of extensions: 64883
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)