Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0088
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 39 0.003
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 32 0.48
07_03_0846 - 21983581-21986055 29 2.6
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 29 3.4
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 29 3.4
03_05_0183 - 21681673-21682524 29 3.4
06_01_0655 + 4742267-4742531,4743313-4744136 28 5.9
11_06_0715 + 26552962-26553510,26553578-26555746 28 7.8
09_04_0235 + 15904891-15905218,15906732-15907594 28 7.8
08_02_1485 - 27466761-27467753 28 7.8
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 28 7.8
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 28 7.8
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -1
Query: 300 VREEPQFRTFGSCTRRAAGGAKLP-SAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 124
+++EP+FR F R G A P +AG+ N + A +++++S K + E SG
Sbjct: 691 IKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNK-KVNQETAASG---- 745
Query: 123 CDFTSRVSHSKREKRRRSPFGSRRSMLS 40
VS+S R+K+ + FGS +S S
Sbjct: 746 ------VSNSTRQKKGKLVFGSNKSSSS 767
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -1
Query: 192 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKREKRRRSPFGS 58
A+ A +GK + E E S+QCD T + +S REK +R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREK-KRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 50 DLRDPNGLRRRFSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 199
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 116 KSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARRVHEPNVRNCGS- 292
KS L+P G+ ++ L A + ++H P + PAA P VR G
Sbjct: 22 KSGALQPQPPHGAAAAVRL---AYTHDGIAVYKHTPPPPVYQTPAAVAAPSPPVRGNGGA 78
Query: 293 -SRTEQYYYRNDKP 331
+ EQ+ + +P
Sbjct: 79 PASAEQHKRKRGRP 92
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 201 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRE-KRRRSPFGSRRSMLSVFFL 28
K+ AS A G D P R GG K+ S + SKR K R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 27 TRASR 13
TRA+R
Sbjct: 64 TRAAR 68
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 490 SQAFIATLLFDPSMSALPIIAKQNSPS 410
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Frame = +2
Query: 50 DLRDPN-GLRRRFSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 226
++RDP G+R F +++ E RG ++ PD A +AS R +
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVASQ----RSHAE 184
Query: 227 DGSFAPPAARRVHEPNVRNCGSS---RTEQYYY 316
S PA +P V + G+ T Y Y
Sbjct: 185 PSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 404 SNAWRILLRNDRKSRHRRIKKQRRYERLAATSQLSCGNFSGT 529
S+ +L N K H +KK R RLA T LSC +G+
Sbjct: 728 SDEEEVLQLNGLKWLHPNVKKLRLIGRLAQTGLLSCAPEAGS 769
>09_04_0235 + 15904891-15905218,15906732-15907594
Length = 396
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 50 DLRDPN-GLRRRFSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 226
++RDP+ G+R + +++ E RG ++ PD +A L ++
Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209
Query: 227 DGSFAPP 247
APP
Sbjct: 210 QEKLAPP 216
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 134 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAAR 256
PP + G +S +P A LA++L + NPA PP ++
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPASPP-PPPTSK 78
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 141 SGGSKQCDFTSRVSHSKREKRRRSPFGSRRSML 43
S G+ Q T R HS E+RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 143 SRGSTVSISLPDSAR-LASALEAFRHNPADGSFAPPAARRVHEPNV 277
SR TV +S+ SA AS + PAD + +PP R E NV
Sbjct: 1262 SRAFTVCLSIMASASPSASPPQPDETPPADSAVSPPPPRAAREDNV 1307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,053,047
Number of Sequences: 37544
Number of extensions: 410648
Number of successful extensions: 1167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -