Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0086
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 33 0.31
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.3
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.2
12_02_0423 + 18944555-18945226,18945309-18945545 29 2.9
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 29 2.9
08_01_0516 - 4499797-4499949,4500040-4500617,4500699-4500756,450... 29 2.9
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 28 6.7
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 28 8.9
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734... 28 8.9
06_01_0476 - 3388176-3389267 28 8.9
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 738 LNGDERSGHVTTLHAWNETPCARRYY 661
L+G G TT AW ETPCA R++
Sbjct: 550 LDGGGGGGEKTTTEAWVETPCAHRFH 575
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 380 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKRPC*A*L*SGIVRRHER 559
G+ PR + D EW N PT+ ++ + +PRE Q+ K P I+ E
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLK-PA-----IFILNSDES 1446
Query: 560 CSISGR 577
CS+ G+
Sbjct: 1447 CSLKGK 1452
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 404 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 303
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 231 GESDCLIKQSIAMALAGVDAM*FLPSALNVNVKKFKQA 344
GE CL+ S+ A+A DAM AL+ +V +FK +
Sbjct: 258 GEGRCLVPTSLVRAIADDDAMATSNPALSRDVNRFKDS 295
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 361 LPP-FTRACLNFFTLTFRALGRNHIASTPARAIAMLCLIRQSDSPCP 224
LPP F+ ++F T R + R H+ P R +A++CL+ S+ P P
Sbjct: 59 LPPSFSSVTMDF--ATDRDIQREHLKDLPRRDLAIICLM-NSNPPIP 102
>08_01_0516 -
4499797-4499949,4500040-4500617,4500699-4500756,
4500855-4500932,4501032-4501091,4501219-4501332,
4501436-4501594
Length = 399
Score = 29.5 bits (63), Expect = 2.9
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = -3
Query: 590 SRETISHLCYTSHVSLQCQTRVKLNRVSFPADSPKPVPLAVVSLDSR*GQW---ESR*SI 420
SR ++HL ++ Q +NR S PA P P+ VV+ + QW + R +
Sbjct: 120 SRMKLAHL--EQEITRARQQSAYINRSSNPATLPAPIDSGVVTFEVEYAQWVEEQGRQTA 177
Query: 419 HARH*LDDEAFGYLKRVIVTPAV--YPRL 339
R L A G R +V A+ Y RL
Sbjct: 178 ELRASLQAAAEGPELRAVVEAALAHYDRL 206
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 267 SQCFV*LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 145
+ C LD+ IP+ R E + E R I+P + P+ P
Sbjct: 268 ADCSPGLDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +3
Query: 135 PSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCLIKQSIAMALAGVDAM*FLPSAL 314
P VVS+S RAR AR + +A E L+ Q + +A+A + LP L
Sbjct: 70 PRPAVVSMSERARLARVAAAGARHAAVPALRLDEHQVLLLQQL-LAVAAAPLLQGLPPLL 128
Query: 315 NVNVKKFKQARVNGGSNYDSLKVAK 389
+ ++ + V GG ++ + K
Sbjct: 129 DAR-RRVRNVPVGGGCRRNTKRSTK 152
>11_06_0667 + 26071774-26072070,26072352-26073153,26073209-26073411,
26075078-26075521,26075703-26075758,26076323-26076402,
26077098-26077174,26077279-26078301
Length = 993
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/90 (23%), Positives = 40/90 (44%)
Frame = +3
Query: 21 ILI*CGLKNCIYLI*HSRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAV 200
I + C C+ + +++RTR L+P++D+ + VV + + C
Sbjct: 847 IAVSCDEAECVDICVRGTLGYLDPEFVRTRTLKPASDVYNFGVVMLEVLSGRRAIC---- 902
Query: 201 QRSAQNWHGQGESDCLIKQSIAMALAGVDA 290
R ++ HG G+ D + + AL +DA
Sbjct: 903 -RWKED-HGDGDGDSPMDSLVNHALPLIDA 930
>06_01_0476 - 3388176-3389267
Length = 363
Score = 27.9 bits (59), Expect = 8.9
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +3
Query: 345 RVNGGSNYDSLKVAKCLVI*LVTRMNGLTRFPLSLSTI*RNHSQGNGLGRISG--ERDPV 518
R G S+ SL +C + + L L +S + R H GNG R+ G +P
Sbjct: 244 REEGESSSSSLDARRCFS--MGSYQYVLAEASLQVS-VHRRHGDGNGRARLRGLAGANPA 300
Query: 519 ELDSSLAL*GDMRGVA*VGDRFARSSL 599
D++ A G G GD F+ S +
Sbjct: 301 GNDAAAAADGKKIGAGSKGDSFSVSKI 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,751,064
Number of Sequences: 37544
Number of extensions: 451533
Number of successful extensions: 1208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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