Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0067
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.0  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   3.2  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   3.2  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    28   4.2  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    27   7.3  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 233 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 138
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 415 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 314
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 406 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 299
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 450 AETPVPGVGNLRACCLPWMW*PFLRLP 370
           + T VPGVGN +   LPW     + +P
Sbjct: 331 SRTSVPGVGNSKGVLLPWFHRKHIMMP 357


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 224 LMNLDNFCRSLVKYRRRIFQMSALSTFDGSFCDYHG 331
           ++  DN    +  Y  R+FQ+  L T   SF   HG
Sbjct: 773 VLEYDNIYEDITSYIYRVFQIYGLKTLVKSFLPRHG 808


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,221,079
Number of Sequences: 28952
Number of extensions: 283526
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)