Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0032
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 53 2e-07
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 52 3e-07
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 48 5e-06
07_01_1123 - 10385215-10385574,10385676-10385810,10386385-103870... 30 1.3
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 30 1.3
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 29 2.3
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 29 2.3
08_02_0092 + 12265446-12265809,12266147-12266743,12266792-122668... 28 5.4
12_01_1079 - 11223247-11223336,11223606-11223717,11224743-112248... 28 7.1
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 28 7.1
02_05_0074 - 25608689-25609138 28 7.1
12_02_0412 - 18799217-18801061 27 9.4
05_01_0068 + 475647-476006 27 9.4
01_06_0944 + 33211652-33212427,33212492-33212660,33212825-332129... 27 9.4
01_01_0363 + 2850954-2853675,2853819-2854225 27 9.4
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = -1
Query: 504 QGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS--ESTVRDCATVFA 331
+GF + T GI +W + ++ G KV+++ LDT+G F+S +S V D +FA
Sbjct: 92 KGFGVGHMRDTKTKGIWVWGTPIELDVN-GSKVSVLYLDTEG-FESIGKSNVYD-DRIFA 148
Query: 330 LSTMLSSVQIYNLSQNIQEDDLQHL 256
L+T+LSS+ IYNL + I+E D+ L
Sbjct: 149 LATVLSSILIYNLPETIREADISRL 173
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = -1
Query: 462 GILMWSEIFKATLDDGEKVAIILLDTQGAFDS--ESTVRDCATVFALSTMLSSVQIYNLS 289
GI +W + +D G KV+++ LDT+G F+S +S V D +FAL+T+LSSV IYNL
Sbjct: 90 GIWIWGTPVEMDID-GSKVSVLYLDTEG-FESVGKSNVYD-DRIFALATVLSSVLIYNLP 146
Query: 288 QNIQEDDLQHL 256
+ ++E D+ L
Sbjct: 147 ETVREADISRL 157
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = -1
Query: 468 TTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLS 289
T G+ MWS K T DG + ++LLDT+G + T +F+L+ +LSS+ IYN
Sbjct: 101 TKGLWMWSAPLKRTGLDGTEYNLVLLDTEGIDAYDQTGTYSIQIFSLAVLLSSMFIYNQM 160
Query: 288 QNIQEDDLQHLH-CSQSTVGWRSRTGAG 208
I E L L ++ T R R G
Sbjct: 161 GGIDEAALDRLSLVTEMTKHIRVRASGG 188
>07_01_1123 -
10385215-10385574,10385676-10385810,10386385-10387091,
10387158-10387455
Length = 499
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 245 RVRSAGARGRGPDSLPAAAVPRARLELPLRSALRSGRRH 129
R R GA +G D +P A P + LPL + R GR H
Sbjct: 23 RKRGRGAT-KGDDPVPDEAAPPCKPSLPLATGSRRGRSH 60
>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -3
Query: 139 DGGMQILSRRLKVSDKQHPELQSLRKHITACFSELACFLM 20
DG +QI SR++K S + P+L + K + C E++ F++
Sbjct: 1043 DGSVQIFSRQMKESTSRFPDLVGMIKEL--CSIEVSSFIL 1080
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -1
Query: 480 SERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQI 301
+E + G+ + ++FK LDDG VAI +L+ Q S +C V ++ + ++I
Sbjct: 750 NEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVERAIRSFDAEC-HVLRMARHRNLIKI 808
Query: 300 YNLSQNI 280
N N+
Sbjct: 809 LNTCSNL 815
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -1
Query: 480 SERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQI 301
+E + G+ + ++FK LDDG VAI +L+ Q S +C V ++ + ++I
Sbjct: 695 NEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVERAIRSFDAEC-HVLRMARHRNLIKI 753
Query: 300 YNLSQNI 280
N N+
Sbjct: 754 LNTCSNL 760
>08_02_0092 +
12265446-12265809,12266147-12266743,12266792-12266861,
12267325-12267427
Length = 377
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +3
Query: 279 GCFARGCISERTTASWTERTRSRSLAPWIHCR 374
G CI + + W+ + S A W+ CR
Sbjct: 221 GSLGFACIEDSSLYVWSRKVNSEGAAEWVQCR 252
>12_01_1079 -
11223247-11223336,11223606-11223717,11224743-11224825,
11226061-11226173,11226261-11226337,11228626-11228719,
11229072-11229160,11230485-11230560,11231637-11231808
Length = 301
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 5 ESRVRHEEAGQLRE-ARRYVLAEGLQLWMLFV*YL*SS*QYLH-AAVRS 145
E V EE G E A++Y ++ GL W L Y + +Y H +VRS
Sbjct: 235 EYEVLDEEPGDDEESAQKYEISPGLSFWFLVCFYYNNQIRYCHDTSVRS 283
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 27.9 bits (59), Expect = 7.1
Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = -3
Query: 469 HDRHTHVVRDIQSDAR*W*KGSDNIARHARRLRQ*I---HGARLRDRVRSVHDAVVRSDI 299
HDRH RD D R S N+ R R R HG R RS R++
Sbjct: 310 HDRHAREDRD--RDYRRSSYSSRNVDRQGRERRDRDSDRHGRSSARRSRSRSPNRGRTEG 367
Query: 298 QPLAKHPGGRPPAPS 254
+ P GRPP PS
Sbjct: 368 ENHRSSPFGRPPEPS 382
>02_05_0074 - 25608689-25609138
Length = 149
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 206 SLPAAAVPRARLELPLRSALRSGRRHADTVKKIKGIRQTASRAAVPPQ 63
S AAA R LP R+ LR+ R A T + + A AAV P+
Sbjct: 22 SAAAAAAARCLGPLPRRARLRTARHVALTPRDLSAEDVAAEEAAVAPK 69
>12_02_0412 - 18799217-18801061
Length = 614
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/29 (31%), Positives = 21/29 (72%)
Frame = -3
Query: 118 SRRLKVSDKQHPELQSLRKHITACFSELA 32
++ +K + ++HP LQ +R+ + C+S+L+
Sbjct: 67 NKSIKKALEKHPTLQGMRRILRICYSDLS 95
>05_01_0068 + 475647-476006
Length = 119
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 396 LLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLHCSQSTVGWRS 223
LL + + + D A+ LS +L + Q +L L H H + +T GWR+
Sbjct: 58 LLSHRPKWGGAANKEDAASCSGLSFLLPTHQPRSLPPAASSTPLPHHHPAGATAGWRN 115
>01_06_0944 +
33211652-33212427,33212492-33212660,33212825-33212936,
33213061-33213159,33213237-33213394,33214911-33215062,
33215162-33215249,33215399-33215476,33215516-33215690,
33216701-33217002
Length = 702
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 471 DTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRD 349
DT+GILM+ + DG + + GA D+E+T+ D
Sbjct: 97 DTSGILMFDTSGNLVILDGRGSSFTVAYGSGAKDTEATILD 137
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 480 SERDTTGILMWSEIFKATL-DDGEKVAIILLDTQGAFDSESTVRDC 346
SE + G + ++K TL D+GE VAI + D + S S +C
Sbjct: 722 SEANLLGKGRYGSVYKCTLQDEGEPVAIKVFDLKQLGSSRSFQAEC 767
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,776,566
Number of Sequences: 37544
Number of extensions: 374500
Number of successful extensions: 1431
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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