Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0032
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37041| Best HMM Match : GBP (HMM E-Value=0) 111 2e-27
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28) 59 3e-09
SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22) 41 0.001
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31) 40 0.001
SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6) 31 0.59
SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035) 31 0.59
SB_48376| Best HMM Match : HMG-CoA_red (HMM E-Value=6.8e-11) 31 0.59
SB_51878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 29 4.2
SB_8432| Best HMM Match : IlvC (HMM E-Value=4) 29 4.2
SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3) 28 5.5
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) 28 7.3
SB_7362| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_54374| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
Length = 466
Score = 111 bits (267), Expect = 5e-25
Identities = 48/70 (68%), Positives = 60/70 (85%)
Frame = -1
Query: 507 LQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFAL 328
L+GFSWRGGSERDTTGILMW++ + DGE+V ++L+DTQGAFDS STV+DCAT+FAL
Sbjct: 14 LEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDSSSTVKDCATIFAL 73
Query: 327 STMLSSVQIY 298
STM SS Q++
Sbjct: 74 STMTSSTQLF 83
Score = 111 bits (266), Expect(2) = 2e-27
Identities = 47/68 (69%), Positives = 54/68 (79%)
Frame = -3
Query: 205 PFQRLQFLVRDWSFPYEAPYGADGGMQILSRRLKVSDKQHPELQSLRKHITACFSELACF 26
PFQRL FLVRDWSFPYEA YG GG QIL RRLK +++QH EL +RKHI CF ++ CF
Sbjct: 134 PFQRLLFLVRDWSFPYEANYGEAGGSQILERRLKTTERQHSELLQVRKHIKECFEKIGCF 193
Query: 25 LMPHPGLK 2
LMPHPGL+
Sbjct: 194 LMPHPGLR 201
Score = 29.5 bits (63), Expect(2) = 2e-27
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 253 LFTEYGRLALEDGGRTPFQ 197
LFTEYG+LA+E+ PFQ
Sbjct: 82 LFTEYGKLAMENNEIKPFQ 100
>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
Length = 368
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/72 (40%), Positives = 45/72 (62%)
Frame = -1
Query: 471 DTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNL 292
+T GI MW + K L DG++VA++ LDT+G + + A VFA++T+LSS IYN
Sbjct: 154 ETMGIWMWGKPLKIKLQDGQEVALVFLDTEGFAATNVSESYDAKVFAVATLLSSYLIYNS 213
Query: 291 SQNIQEDDLQHL 256
+ I + D+ +L
Sbjct: 214 VKIIDQGDIDYL 225
>SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)
Length = 621
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = -1
Query: 483 GSERD--TTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSS 310
G E D T G+ +W + D G+ ++L+D++G S+S ++ + L+ +LSS
Sbjct: 178 GDELDPKTMGLWLWVVPKQFRDDKGQPFTVVLVDSEGTKASQSQQKEDDVIVTLTLLLSS 237
Query: 309 VQIYNLSQNIQEDDLQHLH 253
V IYN DL+ L+
Sbjct: 238 VLIYNSEGVPTASDLEQLN 256
>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
Length = 708
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = -1
Query: 471 DTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYN 295
+T GI ++ K +G +V ++LLD++G + + D +VF LS +LSSV IYN
Sbjct: 86 ETMGIWLYVVDQKFKDANGREVTVVLLDSEGINATGAQKSDDHSVFTLSVLLSSVMIYN 144
>SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)
Length = 526
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -1
Query: 495 SWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS 367
+++ G +T + ++I +A +DDG+ V ++LLD AFD+
Sbjct: 446 AYKKGHSTETALTRIQNDILRA-IDDGQSVILVLLDLSAAFDT 487
>SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)
Length = 556
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -1
Query: 495 SWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS 367
+++ G +T + ++I +A +DDG+ V ++LLD AFD+
Sbjct: 367 AYKKGHSTETALTRIQNDILRA-IDDGQSVILVLLDLSAAFDT 408
>SB_48376| Best HMM Match : HMG-CoA_red (HMM E-Value=6.8e-11)
Length = 135
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = -1
Query: 420 DGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNI 280
DG++ + + T+G + ST R C+ + L T +SS+ N+S+N+
Sbjct: 52 DGQQFFVPMATTEGCLVA-STNRGCSALMVLKTTVSSLSELNISKNL 97
>SB_51878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 359 VDSLSKAPCVSSNIIATFSPSSSVALNISDHMSMPVVSLSEPPRQL 496
VD L + SN + + SPS ++A+ I +S V PP Q+
Sbjct: 90 VDVLKNKFFLKSNALTSLSPSQAIAVLIRKLVSQKYVEFKTPPSQI 135
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Frame = -1
Query: 366 ESTVRDCATVFALSTMLSSVQIYN-------LSQNIQEDDLQHLHCSQSTVGW 229
E TV++C+T + STM ++YN +S N+++ + + C+ G+
Sbjct: 835 ECTVKECSTDLSWSTMTDMERVYNEFLESKTISGNLRDVEFEDKECNTDQTGY 887
>SB_8432| Best HMM Match : IlvC (HMM E-Value=4)
Length = 221
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 495 SWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAF 373
+++ G +T + ++I +A +DDG+ V ++LLD AF
Sbjct: 25 AYKKGHSTETALTRVQNDILRA-IDDGQSVILVLLDLSAAF 64
>SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)
Length = 787
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = -1
Query: 495 SWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS 367
++R +TT + + ++I +A +D+ ++V ++LLD AFD+
Sbjct: 70 AYRRFHSTETTLVCVQNDILRA-MDEEKEVILVLLDLSAAFDT 111
>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 528
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -3
Query: 346 RDRVRSVHDAVVRSDIQPLAKHPGGRPPAPSLFTE----YGRLALEDGGRTPF 200
RDRV V D V++SD+ G L + +++LE GG PF
Sbjct: 206 RDRVNEVTDTVLKSDLVSKMSFTGSTATGKILMAKCVDTVKKMSLELGGNAPF 258
>SB_7362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 495 SWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS 367
S++ +T I + ++I T+D G V I+LLD AFD+
Sbjct: 321 SYKKFHSTETALIKVQNDIL-CTIDGGNSVLILLLDLSAAFDA 362
>SB_54374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 495 SWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS 367
S++ +T I + ++I T+D G V I+LLD AFD+
Sbjct: 43 SYKKFHSTETALIKVQNDIL-CTIDGGNSVLILLLDLSAAFDA 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,935,986
Number of Sequences: 59808
Number of extensions: 385762
Number of successful extensions: 1196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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