Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0021
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0328 - 7487759-7488340 30 1.5
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 1.9
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 29 2.6
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 3.4
01_01_0613 - 4571689-4572348 29 3.4
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.5
12_02_0046 + 12830974-12832386 28 7.8
02_05_0125 + 26046448-26046654,26046754-26047149,26047557-26047763 28 7.8
>03_02_0328 - 7487759-7488340
Length = 193
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Frame = -2
Query: 648 IWIKPALPFAPREVSVLSELALGHLRYSLTDVPPQSNSPP--GSVLEPDTREF*TATSVS 475
++ P+LP P L L +Y+ PP PP G P TR+ S
Sbjct: 27 LYSSPSLPLLPSNQPPLLPLPPAATKYATFPYPPPPQQPPRSGRASTPSTRQRDRRRKPS 86
Query: 474 ATSPLCTL---GTKHRAPADIIDRA-PLPP 397
P GT+ + P ++RA PLPP
Sbjct: 87 RPPPSTETTKGGTQKKKP---LERATPLPP 113
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 162 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 61
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 138 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRE 239
G+ PR + D EW N PT+ ++ + +PRE
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPRE 1426
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -2
Query: 600 LSELALGHLRYSLTDVPPQSNSPPGSVLEPDTREF*TATSVSATSPLCTLGTKHRAPADI 421
L+ + GH R+ + D + S G + D +VSA + LC + H AP +
Sbjct: 378 LATTSSGHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALCAVLCAHEAPGGL 437
Query: 420 IDR 412
DR
Sbjct: 438 PDR 440
>01_01_0613 - 4571689-4572348
Length = 219
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -2
Query: 591 LALGHLRYSLTDVPPQSNSPPGSVLEPDTREF*TATSVSATSPLCTLGTKHRAPADIID 415
L LGH YSL PP S P V + ++ ++S SA + +G + R+ +++D
Sbjct: 51 LELGHSVYSLPLPPPPSQ--PVVVAGGNNDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 466 TTLHAWNETPCARRYY 419
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -2
Query: 636 PALPFAPREVSVLSELALGHLRYSLTDVP--PQSNSPPGSV-LEPDTREF*TATSVSATS 466
PA PR+V V+++ L+ VP P + G V P R+ + + SA
Sbjct: 254 PAAVAPPRQVPVITQQQAPPLKRPAPPVPSPPCAKKIRGPVSASPAARQ--SCVAASAPP 311
Query: 465 PLCTLGTKHRAPADIIDRAPLPP 397
P C AP APLPP
Sbjct: 312 PWCVPPPPRPAPPSRRVMAPLPP 334
>02_05_0125 + 26046448-26046654,26046754-26047149,26047557-26047763
Length = 269
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 556 CTAPVKLPAWQCPRTGHAGVLNGDERFRHVTTLHAWN 446
C+A +PA P T H G ++TTL W+
Sbjct: 134 CSADDAVPAPAAPATSHGGSSGSSSISEYLTTLPGWH 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,513,588
Number of Sequences: 37544
Number of extensions: 468136
Number of successful extensions: 1449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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