Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0002
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 5.0
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +3
Query: 567 SWIVARRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
SWI RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 582 RRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 582 RRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 582 RRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 582 RRTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
RRT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +3
Query: 585 RTSAKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
RT+AKAFAK VFINQERKLE R+R DT LVLT+N
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3
Query: 585 RTSAKAFAKGVFINQERKLEVRKRLDT 665
RT+AKAFAK VFINQERKLE R+R DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = +3
Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
R+T+ ++ AK VFINQERKLE R+R DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 560 VKFLDRRKTNISESICQRCFHQSRTKV 640
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/36 (58%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +3
Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
R+T+ ++ + VFINQERKLE R+R DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 560 VKFLDRRKTNISESICQRCFHQSRTKV 640
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +3
Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
R+T+ ++ + FINQERKLE R+R DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 563 KFLDRRKTNISESICQRCFHQSRTKV 640
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +3
Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
R+T+ ++ + FINQERKLE R+R DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +2
Query: 560 VKFLDRRKTNISESICQRCFHQSRTKV 640
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +3
Query: 582 RRTS-AKAFAKGVFINQERKLEVRKRLDTALVLTVN 686
R+T+ ++ + FINQERKLE R+R DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +2
Query: 560 VKFLDRRKTNISESICQRCFHQSRTKV 640
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 36.3 bits (80), Expect = 0.025
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 94 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAF 246
T + R ++++ R +WRASL Y K+VAVKKLVV F
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 94
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 145 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAF 246
R +WRASL Y K+VAVKKLVV F
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 47
>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 569 RISPLTSQYECPQLSLLIITWSSENQQNRTEIIFYYSMHEIFK 441
R PL + C Q+S TW +E R + FY+ + +IF+
Sbjct: 73 RNRPLRQVWNCLQVSA---TWINEQYSTRKKYFFYFYLSQIFR 112
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 243 CNYELFNRNNFSIRYWSWNYRGCWH 169
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 157 RASLXXXXXXXXXXXXYTKIVAVKKLVVAF 246
RASL Y K+VAVKKLVV F
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGF 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,807,759
Number of Sequences: 59808
Number of extensions: 448325
Number of successful extensions: 1180
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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