Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0002
         (720 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128005-1|BAC87228.1|  219|Homo sapiens protein ( Homo sapiens ...    31   3.1  
AL117478-1|CAB55951.1|  698|Homo sapiens hypothetical protein pr...    30   7.3  

>AK128005-1|BAC87228.1|  219|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46124 fis, clone TESTI2040372. ).
          Length = 219

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 339 EPAFFRTPAHRRYVRKRVSITADAVHRQPAHKCNYELF-NRNNFSIRYWSWNYRGCWHQT 163
           E A   TP+ R + R   + T  A H  PAH     L   +++FS++ ++ N    WH+T
Sbjct: 52  ERAELTTPSERCFHRGARAETGPARHPSPAHSSRLMLLRGKSSFSLKSFN-NRILTWHRT 110

Query: 162 CP 157
            P
Sbjct: 111 SP 112


>AL117478-1|CAB55951.1|  698|Homo sapiens hypothetical protein
           protein.
          Length = 698

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 511 PGVLKTNKIEPRSYSIIPCTKYSSSIFSPL*AL*FVQSKIVGPPRHSPKS 362
           PG ++     P++  ++PC     ++ SP  +     S+++GPPR  P S
Sbjct: 452 PGAVRLPHPLPQALPVLPCPAKCETLLSPPPSPKVSLSRLLGPPRTGPCS 501


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,080,288
Number of Sequences: 237096
Number of extensions: 2071930
Number of successful extensions: 3754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3754
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)