Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0161
(363 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29117-7|CAA82379.1| 159|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 4.0
U64846-7|AAG24116.2| 327|Caenorhabditis elegans Serpentine rece... 27 4.0
U64846-3|AAG24114.1| 327|Caenorhabditis elegans Serpentine rece... 27 4.0
AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine re... 27 4.0
Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical p... 26 9.3
Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical pr... 26 9.3
U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical pr... 26 9.3
AY313179-1|AAP79304.1| 782|Caenorhabditis elegans myotubularin-... 26 9.3
AY313177-1|AAP79302.1| 676|Caenorhabditis elegans myotubularin-... 26 9.3
>Z29117-7|CAA82379.1| 159|Caenorhabditis elegans Hypothetical
protein C48B4.7 protein.
Length = 159
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = -2
Query: 254 LLIILTEIHRLLMSVFVVLQSLHYANGGCMMILWGAIIFLRLLVFYC 114
LL+ + + + ++HY C++++W A++F+ L+ C
Sbjct: 59 LLVFTISSFVAFLGEYGTMMAIHYYVS-CILLIWPAVVFIMKLISLC 104
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 255 SINYPNRNPSAIDVSFCSAPITP 187
SI P+ PSA DV+ +AP+TP
Sbjct: 891 SIASPSPAPSATDVASTTAPVTP 913
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 255 SINYPNRNPSAIDVSFCSAPITP 187
SI P+ PSA DV+ +AP+TP
Sbjct: 891 SIASPSPAPSATDVASTTAPVTP 913
>U64846-7|AAG24116.2| 327|Caenorhabditis elegans Serpentine
receptor, class t protein37 protein.
Length = 327
Score = 27.1 bits (57), Expect = 4.0
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Frame = -2
Query: 356 HVALGCMTTKSRGHQLYDLIDEFDLCVLNNGSFTLLIILTEIHRLLMSVFVVLQSLHYAN 177
++ + + + ++L F L + + ++ +LT I + +VF + Y +
Sbjct: 52 YIPIALIMLEKENYKLTSFKIMFQLAITDIIGISINSVLTGILAIQGAVFCTYPTFIYLS 111
Query: 176 GGCMMILW-----GAIIFL--RLLVFYCPLIDTKL 93
G +M LW ++I + RLL+F+ P I+ +L
Sbjct: 112 GLFVMCLWCLTCLTSLILVCNRLLIFFNPNIEAQL 146
>U64846-3|AAG24114.1| 327|Caenorhabditis elegans Serpentine
receptor, class t protein36 protein.
Length = 327
Score = 27.1 bits (57), Expect = 4.0
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Frame = -2
Query: 356 HVALGCMTTKSRGHQLYDLIDEFDLCVLNNGSFTLLIILTEIHRLLMSVFVVLQSLHYAN 177
++ + + + ++L F L + + ++ +LT I + +VF + Y +
Sbjct: 52 YIPIALIMLEKENYKLTSFKIMFQLAITDIIGISINSVLTGILAIQGAVFCTYPTFIYLS 111
Query: 176 GGCMMILW-----GAIIFL--RLLVFYCPLIDTKL 93
G +M LW ++I + RLL+F+ P I+ +L
Sbjct: 112 GLFVMCLWCLTCLTSLILVCNRLLIFFNPNIEAQL 146
>AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine
receptor, class sx protein12 protein.
Length = 291
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -2
Query: 287 DLCVLNNGSFTLLIILTEIHRLLMSVFVVLQSLHYANGGCMM--ILWGAIIFLRLLVFYC 114
+LC++ + L +TEI R +F+ A G +M I+ +IF++ +FY
Sbjct: 55 NLCLVGTILVSALTFITEIRRDECFIFISFYIFSQAAQGLLMLLIMIDVLIFVKFPLFYR 114
Query: 113 PLIDTK 96
L + K
Sbjct: 115 NLANWK 120
>Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical
protein F53A2.8c protein.
Length = 674
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 168 HDDSMGSYHFPTLTRVLLSVDRYQINPPIEKFLYNKTD 55
HDD M ++ PT LL +D + +YN+ D
Sbjct: 466 HDDYMNPFYSPTAHVALLDLDTRAARFTVWTAMYNRFD 503
>Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical
protein F53A2.8b protein.
Length = 782
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 168 HDDSMGSYHFPTLTRVLLSVDRYQINPPIEKFLYNKTD 55
HDD M ++ PT LL +D + +YN+ D
Sbjct: 574 HDDYMNPFYSPTAHVALLDLDTRAARFTVWTAMYNRFD 611
>Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical
protein F53A2.8a protein.
Length = 676
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 168 HDDSMGSYHFPTLTRVLLSVDRYQINPPIEKFLYNKTD 55
HDD M ++ PT LL +D + +YN+ D
Sbjct: 468 HDDYMNPFYSPTAHVALLDLDTRAARFTVWTAMYNRFD 505
>U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical
protein T19D12.9 protein.
Length = 462
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 206 VVLQSLHYANGGCMMILWGAIIFLRLLV-FYCP 111
V Q +H+ + WGAI L +++ F CP
Sbjct: 376 VARQHVHFVMAVISLSAWGAIFLLPIIIGFVCP 408
>AY313179-1|AAP79304.1| 782|Caenorhabditis elegans
myotubularin-related protein MTM-6B protein.
Length = 782
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 168 HDDSMGSYHFPTLTRVLLSVDRYQINPPIEKFLYNKTD 55
HDD M ++ PT LL +D + +YN+ D
Sbjct: 574 HDDYMNPFYSPTAHVALLDLDTRAARFTVWTAMYNRFD 611
>AY313177-1|AAP79302.1| 676|Caenorhabditis elegans
myotubularin-related protein MTM-6A protein.
Length = 676
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 168 HDDSMGSYHFPTLTRVLLSVDRYQINPPIEKFLYNKTD 55
HDD M ++ PT LL +D + +YN+ D
Sbjct: 468 HDDYMNPFYSPTAHVALLDLDTRAARFTVWTAMYNRFD 505
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,361,843
Number of Sequences: 27780
Number of extensions: 164111
Number of successful extensions: 429
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -