SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0161
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61730.1 68416.m06921 hypothetical protein                          30   0.40 
At1g19770.1 68414.m02471 purine permease-related low similarity ...    29   0.93 
At5g47900.1 68418.m05917 hypothetical protein                          29   1.2  
At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putati...    29   1.2  
At3g62500.1 68416.m07022 expressed protein hypothetical proteins...    28   1.6  
At1g15320.1 68414.m01833 hypothetical protein                          28   2.1  
At5g49060.1 68418.m06070 DNAJ heat shock N-terminal domain-conta...    27   2.8  
At5g53510.1 68418.m06650 oligopeptide transporter OPT family pro...    27   3.7  
At5g36000.1 68418.m04335 expressed protein strong similarity to ...    27   3.7  
At3g57760.1 68416.m06434 protein kinase family protein contains ...    27   3.7  
At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative...    27   3.7  
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    26   6.5  
At4g18220.1 68417.m02707 purine permease family protein similar ...    26   8.6  
At3g18660.1 68416.m02370 glycogenin glucosyltransferase (glycoge...    26   8.6  
At3g12090.1 68416.m01505 senescence-associated family protein si...    26   8.6  

>At3g61730.1 68416.m06921 hypothetical protein
          Length = 354

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 79  FNGRINLVSINGQ*NTSKRRKMIAPHRIIMH 171
           ++G +NL S  G+ N S+ + +IAPH + +H
Sbjct: 290 YSGILNLKSWTGESNDSQPKAVIAPHAVAVH 320


>At1g19770.1 68414.m02471 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 393

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 144 HFPTLT-RVLLSVDRYQINPPIEKFLYNKTDWTKYNE 37
           H+PT+T  ++  +    I   +E F Y+KT+ ++YNE
Sbjct: 45  HWPTITISIIFVIIGQSIAKLLENFYYDKTNRSEYNE 81


>At5g47900.1 68418.m05917 hypothetical protein 
          Length = 384

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 255 SINYPNRNPSAIDV-SFCSAPITP 187
           SINYPN  P   D  S+C AP  P
Sbjct: 302 SINYPNNGPLPPDAPSWCQAPFDP 325


>At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putative
           / proton pump 10, putative / proton-exporting ATPase,
           putative strong similarity to SP|Q43128 ATPase 10,
           plasma membrane-type (EC 3.6.3.6) (Proton pump 10)
           {Arabidopsis thaliana}; contains InterPro accession
           IPR001757: ATPase, E1-E2 type; contains Pfam profile
           PF00690: Cation transporter/ATPase, N-terminus
          Length = 947

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 257 TLLIILTEIHRLLMSVFVVLQSLHYANGGCMMILWGAIIFLRLLVFYCPLIDTKLI 90
           TLLI    + +L  ++  V  ++ +A    +   W  +I+L  L+FY PL   K +
Sbjct: 792 TLLIFAFILAQLAATLIAVYANISFAKITGIGWRWAGVIWLYSLIFYIPLDVIKFV 847


>At3g62500.1 68416.m07022 expressed protein hypothetical proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 374

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 82  NGRINLVSINGQ*NTSKRRKMIAPHRIIMH 171
           +G +NL S  GQ + S+ + +IAPH + +H
Sbjct: 284 SGILNLKSWTGQPDISQPKAVIAPHAVAVH 313


>At1g15320.1 68414.m01833 hypothetical protein
          Length = 307

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -1

Query: 198 PITPLCEWWVHDDSMGSYH--FPTLTRVLLSVD--RYQINPPIEKFLYNKTDWTKY 43
           P +PLC   +H++++ S    F  + +V+      RY++   + K L N+TD  ++
Sbjct: 214 PFSPLCNTRLHEEALRSVQELFGNIHKVISKAQRLRYKVLELVMKKLLNQTDTAEF 269


>At5g49060.1 68418.m06070 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 354

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 197 QSLHYANGGCMMILWGAIIFLRLLVFYCPLIDTKLILPLKNSYTTRQTGRNT 42
           + ++ A   C+ I+     FL LL+ Y P  +    L    SY   +T +NT
Sbjct: 228 EEINVAGPSCLTIIQILPFFLLLLLAYLPFSEPDYSLHKNQSYQIPKTTQNT 279


>At5g53510.1 68418.m06650 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 741

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -2

Query: 224 LLMSVFVVLQSLHYANGGCMMILWGAIIFLRLLVFYCPLI 105
           L++++ +++    Y N    +  WG ++   + VF+ PLI
Sbjct: 426 LVLNIALIMFISFYYNATVQLPWWGVLLACAIAVFFTPLI 465


>At5g36000.1 68418.m04335 expressed protein strong similarity to
           unknown protein (emb|CAB71103.1)
          Length = 355

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 82  NGRINLVSINGQ*NTSKRRKMIAPHRIIMH 171
           +G +NL S  G+ + S+ + +IAPH + +H
Sbjct: 292 SGILNLKSWTGEADDSQPKAVIAPHAVAVH 321


>At3g57760.1 68416.m06434 protein kinase family protein contains
           similarity to protein kinases
          Length = 378

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 213 SFCSAPITPLCEWWVHDDSMGSYH 142
           +FC+    P  E +VHDD++  YH
Sbjct: 192 NFCNCITIPEGETFVHDDTLQKYH 215


>At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative
           (FUT2) identical to SP|O81053 Probable
           fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) {Arabidopsis
           thaliana}; similar to xyloglucan fucosyltransferase
           GI:5231145 from [Arabidopsis thaliana]
          Length = 539

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 237 RNPSAIDVSFCSAPITPLCEWWVHDDSMGSYHFPTLTRVLLSVDR--YQINPPIEKFLYN 64
           + PS  ++   S  +T L   +        +  PT+TR ++ + +  ++ +   EK ++N
Sbjct: 379 KQPSEEELKLKSVLVTSLTTGYFEILKTMYWENPTVTRDVIGIHQPSHEGHQQTEKLMHN 438

Query: 63  KTDWTKYNELSLT 25
           +  W +   LSLT
Sbjct: 439 RKAWAEMYLLSLT 451


>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 130 KRRKMIAPHRIIM--HPPFA*WSDWSTTKTDINSRWISVRI 246
           KR K   P R I   H   A   +W+ +  D +S+W+  RI
Sbjct: 363 KRNKAEIPRRCIKVGHQHQAQVDEWTESGVDSDSKWLGTRI 403


>At4g18220.1 68417.m02707 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 344

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = -2

Query: 236 EIHRLLMSVFVVLQSLHYANGGCMMILWGAIIFLRLLVFYCPLIDTKLILPLKNSYTTRQ 57
           E+  +  SV  +L  L+Y NGG     W A + ++L+ F  P++    +L +K   TT++
Sbjct: 6   EVQVIGQSVATILGRLYYENGGNSK--WLATV-VQLVGF--PILLPYHLLSVKTHTTTQR 60

Query: 56  TGRNT 42
            G+ T
Sbjct: 61  DGKLT 65


>At3g18660.1 68416.m02370 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Homo sapiens [SP|P46976], Oryctolagus cuniculus
           [SP|P13280]
          Length = 655

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 165 DDSMGSYHFPTLTRV---LLSVDRYQINPPIEKFLYNKTDWTKYNELSLTAF 19
           DD++  YH   L      + ++ R + NP  EK  YN+ +++K+    LT +
Sbjct: 355 DDNISGYHRSGLEAAGWQIRTIQRIR-NPKAEKDAYNEWNYSKFRLWQLTDY 405


>At3g12090.1 68416.m01505 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 282

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -2

Query: 224 LLMSVFVVLQSLHYANGGCMMILWGAIIFLRLLVFYCPLIDTKLILPLKNSYTTRQTG 51
           L++   +++ SL    G C  + W   ++L +++F   LI T + L L     T Q G
Sbjct: 46  LVIGFIILIVSLAGFIGACFNVAWALWVYLVVMIF---LIATLMGLTLFGLVVTSQGG 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,842,242
Number of Sequences: 28952
Number of extensions: 150826
Number of successful extensions: 371
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -