BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0160 (734 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 48 6e-06 02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 46 2e-05 05_03_0143 - 8873364-8873834,8873909-8874010 32 0.54 05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310... 30 1.7 02_02_0470 - 10700092-10700505 30 2.2 10_08_0951 - 21769342-21769752 29 5.1 10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380... 28 6.7 >04_04_0211 - 23636377-23636532,23636624-23636805,23637853-23637959, 23637997-23638280 Length = 242 Score = 48.4 bits (110), Expect = 6e-06 Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Frame = +2 Query: 284 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFSY 457 PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGL Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130 Query: 458 WTFCIQFVPAKAVIPQPYVI 517 F I VP + V QPYVI Sbjct: 131 GPFKINGVPIRRV-NQPYVI 149 >02_04_0433 - 22891261-22891509,22892181-22892301,22892405-22892496, 22892692-22892755,22892855-22892920,22893102-22893193, 22893991-22894050,22894181-22894270,22894484-22894613, 22895066-22895157,22895299-22895373,22895663-22895754, 22896496-22896586,22897541-22897574,22897745-22897791, 22899110-22899209,22899300-22899436,22900837-22901015, 22901146-22901188,22901264-22901297,22901839-22901948, 22902043-22902224,22903062-22903168,22903266-22903480 Length = 833 Score = 46.4 bits (105), Expect = 2e-05 Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Frame = +2 Query: 278 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFS 454 FYP + K RA S + + ++R + GTV ILLAGR+ GKRVV + L SGL Sbjct: 50 FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106 Query: 455 YWTFCIQFVPAKAVIPQPYVI 517 F I VP + V Q YVI Sbjct: 107 TGPFKINGVPIRRV-NQAYVI 126 >05_03_0143 - 8873364-8873834,8873909-8874010 Length = 190 Score = 31.9 bits (69), Expect = 0.54 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = +2 Query: 377 CILLAGRHAGKRVVLVGILPSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSAT 550 C+LLAG +RV+ + LP+ LP W + + A +P P V L + +S+T Sbjct: 109 CLLLAGGGDWRRVLHLP-LPTSLPRQCWRCPVVLIDAGKPLPSPAVSSSLSPHSSSST 165 >05_07_0258 - 28729620-28729782,28730193-28730339,28730808-28731032, 28731148-28731178,28731424-28731940 Length = 360 Score = 30.3 bits (65), Expect = 1.7 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Frame = -2 Query: 460 PVTKRQTAGQNSNKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTATR*GTDFLLSGV 281 P T R A N Y + TS + A ++ L +DP+ ++ +T G L + Sbjct: 135 PNTVRDHASFAFNSYYQKNPVQTSCDFAGTAIL-TSTDPSSSSCKYPSTSTGASVLNTST 193 Query: 280 EGLPTFEGYVLVPPFF---SPPI 221 P F GY PP F SPP+ Sbjct: 194 PTNPAFGGYDNSPPGFGNNSPPL 216 >02_02_0470 - 10700092-10700505 Length = 137 Score = 29.9 bits (64), Expect = 2.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 359 LKIGTVCILLAGRHAGKRVVLVGILPSG 442 LK G ILL GR+AG++ V+V + G Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32 >10_08_0951 - 21769342-21769752 Length = 136 Score = 28.7 bits (61), Expect = 5.1 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 359 LKIGTVCILLAGRHAGKRVVLVGILPSG 442 LK G ILL GR AG++ V+V + G Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32 >10_08_0254 + 16236689-16236793,16237760-16237808,16237988-16238076, 16238178-16238234,16238684-16238746,16238828-16238893, 16239520-16239606,16239691-16239784,16240351-16240673, 16241022-16241048,16241065-16241145,16241445-16241476, 16242126-16242266,16242455-16242516,16243170-16243387 Length = 497 Score = 28.3 bits (60), Expect = 6.7 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -2 Query: 520 PNHIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLAC 401 P IR +N G+SG ++ K + + +T + N + AC Sbjct: 403 PKRIRRQNEGVSGEQVEKKKAMHEERTGERKCNGGSAFAC 442 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,019,110 Number of Sequences: 37544 Number of extensions: 416098 Number of successful extensions: 1043 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1012 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1041 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1933531792 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -