SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0160
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 31   0.97 
SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)                31   0.97 
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)                   29   3.0  
SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365
           H  L+++ + GH +  + P+      G N   +NPL   S+S E  N +Y
Sbjct: 697 HNPLQSSSMEGHNITYQNPLQSSSMEGHNITYHNPL--QSSSMEGHNITY 744



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365
           H  L+++ + GH +    P+      G N   +NPL   S+S E  N +Y
Sbjct: 729 HNPLQSSSMEGHNITYHNPLQSSSMEGHNITYHNPL--QSSSMEGHNITY 776



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365
           H  L+++ + GH +    P+      G N    NPL   S+S E  N +Y
Sbjct: 681 HNSLQSSSMEGHNITYHNPLQSSSMEGHNITYQNPL--QSSSMEGHNITY 728



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 505 LRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365
           L+++ + GH +    P+      G N   +NPL   S+S E  N +Y
Sbjct: 716 LQSSSMEGHNITYHNPLQSSSMEGHNITYHNPL--QSSSMEGHNITY 760



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365
           H  L+++ + GH +    P+      G N    NPL   S+S E  N +Y
Sbjct: 745 HNPLQSSSMEGHNITYHNPLQSSSMEGHNITYQNPL--QSSSIEGHNITY 792



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEEN 380
           H  L+++ + GH +  + P+      G N    NPL   S   E+
Sbjct: 761 HNPLQSSSMEGHNITYQNPLQSSSIEGHNITYQNPLQSSSMEVES 805


>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
          Length = 561

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 274 LPTFEGYVLVPPFFSPP 224
           +PT +GY LVP FFSPP
Sbjct: 528 MPTAQGYGLVPNFFSPP 544


>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
          Length = 1440

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 469 AKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSYLQVGS 350
           +  PV+ R T  ++SNK +P   +S S ++  S  L+ GS
Sbjct: 207 SSSPVSVRSTESEHSNKASPRFAISPSRDSPTSPPLRPGS 246


>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = +2

Query: 239 WGNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 418
           W N    L+  K F   +E   + +  R FSKH+R++R   ++  + + L         +
Sbjct: 292 WKNLKKVLELEKEFTVYKELNGSDACKRVFSKHIRKLRREFELRKLDLYLQNLPQALDEL 351

Query: 419 LVGILPSGLPFSYWTFC 469
           L  +    L  + WT C
Sbjct: 352 LPTLTSIDLCQNSWTNC 368


>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 104 VAQIIVPGFFRRFFLSQPTCRCGSRLGRRFRLC 6
           V Q+I+P   RR+    P+C  GS +GR  R C
Sbjct: 477 VKQLIIPTRDRRYL---PSCEQGSYIGRNTRKC 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,137,401
Number of Sequences: 59808
Number of extensions: 448397
Number of successful extensions: 1239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -