BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0160 (734 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 31 0.97 SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28) 31 0.97 SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30) 29 3.0 SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2 SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0 >SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) Length = 1178 Score = 31.1 bits (67), Expect = 0.97 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -2 Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365 H L+++ + GH + + P+ G N +NPL S+S E N +Y Sbjct: 697 HNPLQSSSMEGHNITYQNPLQSSSMEGHNITYHNPL--QSSSMEGHNITY 744 Score = 30.3 bits (65), Expect = 1.7 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -2 Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365 H L+++ + GH + P+ G N +NPL S+S E N +Y Sbjct: 729 HNPLQSSSMEGHNITYHNPLQSSSMEGHNITYHNPL--QSSSMEGHNITY 776 Score = 29.5 bits (63), Expect = 3.0 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = -2 Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365 H L+++ + GH + P+ G N NPL S+S E N +Y Sbjct: 681 HNSLQSSSMEGHNITYHNPLQSSSMEGHNITYQNPL--QSSSMEGHNITY 728 Score = 29.1 bits (62), Expect = 3.9 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = -2 Query: 505 LRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365 L+++ + GH + P+ G N +NPL S+S E N +Y Sbjct: 716 LQSSSMEGHNITYHNPLQSSSMEGHNITYHNPL--QSSSMEGHNITY 760 Score = 28.7 bits (61), Expect = 5.2 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = -2 Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSY 365 H L+++ + GH + P+ G N NPL S+S E N +Y Sbjct: 745 HNPLQSSSMEGHNITYHNPLQSSSMEGHNITYQNPL--QSSSIEGHNITY 792 Score = 27.9 bits (59), Expect = 9.0 Identities = 12/45 (26%), Positives = 20/45 (44%) Frame = -2 Query: 514 HIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEEN 380 H L+++ + GH + + P+ G N NPL S E+ Sbjct: 761 HNPLQSSSMEGHNITYQNPLQSSSIEGHNITYQNPLQSSSMEVES 805 >SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28) Length = 561 Score = 31.1 bits (67), Expect = 0.97 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -2 Query: 274 LPTFEGYVLVPPFFSPP 224 +PT +GY LVP FFSPP Sbjct: 528 MPTAQGYGLVPNFFSPP 544 >SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30) Length = 1440 Score = 29.5 bits (63), Expect = 3.0 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -2 Query: 469 AKGPVTKRQTAGQNSNKYNPLACMSTSEENANSSYLQVGS 350 + PV+ R T ++SNK +P +S S ++ S L+ GS Sbjct: 207 SSSPVSVRSTESEHSNKASPRFAISPSRDSPTSPPLRPGS 246 >SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1309 Score = 28.7 bits (61), Expect = 5.2 Identities = 19/77 (24%), Positives = 33/77 (42%) Frame = +2 Query: 239 WGNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 418 W N L+ K F +E + + R FSKH+R++R ++ + + L + Sbjct: 292 WKNLKKVLELEKEFTVYKELNGSDACKRVFSKHIRKLRREFELRKLDLYLQNLPQALDEL 351 Query: 419 LVGILPSGLPFSYWTFC 469 L + L + WT C Sbjct: 352 LPTLTSIDLCQNSWTNC 368 >SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 540 Score = 27.9 bits (59), Expect = 9.0 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 104 VAQIIVPGFFRRFFLSQPTCRCGSRLGRRFRLC 6 V Q+I+P RR+ P+C GS +GR R C Sbjct: 477 VKQLIIPTRDRRYL---PSCEQGSYIGRNTRKC 506 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,137,401 Number of Sequences: 59808 Number of extensions: 448397 Number of successful extensions: 1239 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 984 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1237 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1974037988 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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