BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0160 (734 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 3.0 AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 6.9 DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 9.1 AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.1 >AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic acetylcholine receptorApisa2 subunit protein. Length = 541 Score = 23.0 bits (47), Expect = 3.0 Identities = 7/17 (41%), Positives = 10/17 (58%) Frame = +2 Query: 236 EWGNQNIPLKRRKSFYP 286 EW +P +R K +YP Sbjct: 200 EWDILGVPAERHKKYYP 216 >AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic acetylcholine Apisa7-2 subunit protein. Length = 461 Score = 21.8 bits (44), Expect = 6.9 Identities = 11/32 (34%), Positives = 16/32 (50%) Frame = -2 Query: 304 TDFLLSGVEGLPTFEGYVLVPPFFSPPICFTT 209 T FL++ E LP E L+ ++ IC T Sbjct: 256 TVFLMTIRESLPPTEKTPLISLYYGVSICLVT 287 >DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel protein. Length = 463 Score = 21.4 bits (43), Expect = 9.1 Identities = 8/26 (30%), Positives = 12/26 (46%) Frame = +1 Query: 280 LPHSGENPCLIWWPSIQQACTQDPTQ 357 +P +NP + W AC+ P Q Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398 >AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic acetylcholine receptoralpha7-1 protein. Length = 555 Score = 21.4 bits (43), Expect = 9.1 Identities = 7/23 (30%), Positives = 14/23 (60%) Frame = +2 Query: 467 CIQFVPAKAVIPQPYVIRHLHQN 535 CI F+ A +V+ ++ + H+N Sbjct: 300 CIMFMVASSVVSTILILNYHHRN 322 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 195,145 Number of Sequences: 438 Number of extensions: 4079 Number of successful extensions: 6 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22901220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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